Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00028 ATGGAAAAAGCTTACGATGCAGTGAAAGATGTCACAAAGAAAAAAGAGCTTTGGAGACTTGGAGTTGTTGTTGATGATCTTTGGATTACCTACAAAGGAGGGAGTGAGGAACATATTGAACTACTGTTGAGGGATGTTAAGGGAGATACCATCCAGGCTACAATCCTTCGTGATGACATTGCTAAGTGGAAGGACAAATTGAACGAAGGAAAAACATATTCCATGCGTAACTTTCGTGTTACTAAAAATGAGGGTGGATTTAAGATGACTCCTCACAACTTTATGTTGACCTTTGTTGGAACGACGACGAAAGTTGAAGAGATTGTTATGCCTGAAATTCCCGCAACACTTTTTAAATTTAAGGACTTTGCAGAAATATTGGCTGGTAACTATCGCCCAGATCTATGTATTGATGTTATTGGTGTTGTGCATACTGTTGGCAAGTGTGTAACTCCTACAAATACCAGGAAAGGAAGTGCTGCTTTTATTCTTTCTGATTTAAGCCATCAACAAATTGATTGCACTCTTTGGGATGCAATGTCTGTCAAATTTCTTGATCACATCAACTCAAGACCCGACTTTGGTCCGGTAGTGATTATCATGAAACATGTTCGGGTGAAAGAACCCCAAGGTATATATAACATACAACTGTCAAATGTATGGGATGGAACAAAACTGCTGTTTGATGAAAGCATTCCTGAAATTAAAACTTTCAAAGATAGCTTGGCAAAGAATGTGGATTATAACACCCAACAATCTGCTATATCTACTTCAACCCAAATGTACACACAAGGTTCTGTGGGAACTCAATATAACTCAGATGAGTATTTCATGAAGGATGCTCAGGTTGTTCGCCTTGCAGATATGAAAAAACTCAATGAGGACACATTGTGTGTTTGTATTGTTACTACTTCACACGTTATAATTTCAACACAGGGATGGTATTTCATGAGTTGTACTGAATGCCAGACAAAGGCTGAAGGAAATGAACCCCCCTTTGTTTGTAGAAAGGGCCACAAAACAACTGATCCTGTCATCAAGTACAAGTTAGATGTTGAGGTAGAAGATGTAGATGATGAAGAAGAAACAGCAAAGTTTGTCTTTTGGGATAGTACACTTAATGACTTGCTTGGCATTTCTACAAAGGATTTGATTGCTAAAATGAAAAAGGCTGGTATAACTGATCTACAAGATTATCCTGATGAACTTAATGAAATGATGCATCGCACTTTTGCTATGAGAGTTAAATGGCAACATTCTTGGAACCAAGCATCTGTGTCAAAATGTAAGGATAGTAAAGATTTGATTGCCAAGATCCAAGACCAACTCCCAGTCGCAGAGAGTCTACACAAAGAAACTTTGACTATTGAGGACACTCCATGTGATGAACAACCTCAACATGTTGCACAAATTGGGCCAGTTCAGGAAGATTTTAACAAATTCTCTGGCTTAGATGATGCAATTTTATCCACACCAAACTTCTCAGCTTCCGCAGATAATGAAGTAACTGGGTCTATTCAAAAGACTCCAGCCAAAAGAGGTGGTTCAAAGAAACAATCATATGATGATGAAGCACAAACACAGGCCTCATCAACAAGATCTGGGAAGCATATCAAGAAGGAAAAGTGA 1629 0.3849 MEKAYDAVKDVTKKKELWRLGVVVDDLWITYKGGSEEHIELLLRDVKGDTIQATILRDDIAKWKDKLNEGKTYSMRNFRVTKNEGGFKMTPHNFMLTFVGTTTKVEEIVMPEIPATLFKFKDFAEILAGNYRPDLCIDVIGVVHTVGKCVTPTNTRKGSAAFILSDLSHQQIDCTLWDAMSVKFLDHINSRPDFGPVVIIMKHVRVKEPQGIYNIQLSNVWDGTKLLFDESIPEIKTFKDSLAKNVDYNTQQSAISTSTQMYTQGSVGTQYNSDEYFMKDAQVVRLADMKKLNEDTLCVCIVTTSHVIISTQGWYFMSCTECQTKAEGNEPPFVCRKGHKTTDPVIKYKLDVEVEDVDDEEETAKFVFWDSTLNDLLGISTKDLIAKMKKAGITDLQDYPDELNEMMHRTFAMRVKWQHSWNQASVSKCKDSKDLIAKIQDQLPVAESLHKETLTIEDTPCDEQPQHVAQIGPVQEDFNKFSGLDDAILSTPNFSASADNEVTGSIQKTPAKRGGSKKQSYDDEAQTQASSTRSGKHIKKEK 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00028 542 Gene3D - 6 109 IPR012340 -
Trre13g00028 542 SUPERFAMILY Nucleic acid-binding proteins 7 104 IPR012340 -
Trre13g00028 542 SUPERFAMILY Nucleic acid-binding proteins 291 421 IPR012340 -
Trre13g00028 542 CDD RPA1_DBD_B_like 138 242 - -
Trre13g00028 542 Pfam Replication protein A OB domain 132 211 IPR031657 -
Trre13g00028 542 Gene3D - 261 441 IPR012340 -
Trre13g00028 542 MobiDBLite consensus disorder prediction 492 514 - -
Trre13g00028 542 CDD RPA1_DBD_A_like 19 103 - -
Trre13g00028 542 Gene3D - 112 254 IPR012340 -
Trre13g00028 542 MobiDBLite consensus disorder prediction 492 542 - -
Trre13g00028 542 SUPERFAMILY Nucleic acid-binding proteins 118 245 IPR012340 -
Trre13g00028 542 Pfam Domain of unknown function DUF223 40 131 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00028 Trre-Chr13 264521 267119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00028 18 428 Core DNA Replication Machinery Family AT5G08020 24.541 5.96e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00028 - - tpra:123884216 587.415