Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00022 ATGTCAGGAATATCATACTCTGCTTTTATCACCCCTAGGTTGGTTCTCAACAAGTTTCTTGCTAAATCTCAACGTGAAGGGGTTGGAGCTATTGTTAGAAGAGGCATTGGAAGGAGCGAGTTGAGAAACTTGGATCCTTTTCTAATGTTGGATCACTTCTCAGTGTCTCCTCCTGGAGGATTTCCGGATCATCCACACAGAGGCTTTGAAACGGTCACATACATGCTAGAGGGAGGTATGACTCACCAAGATTTTGCTGGCCACAAGGGTACAATAAGAGCTGGTGATGTTCAGTGGATGACTGCAGGCAGGGGAATAATTCACTCTGAAATGCCTGCAGAAGCAAACAACAATGGATTGCAATTATGGATCAATTTAAAATCCAATGACAAAATGATTGAGCCAAATTATCAAGAACTTCCAAGTGAGAACATACCATCAGGAGAAAAAGATGGAGTTGAAGTGAGAGTGATAGCAGGAGAATCAATGGGAGTGAATTCACCAGTCTACACAAGAACACCAACTATGTTCCTTGATTTCACCATGAGGCCAGGAACTCAGCTGCATCAAAATATTCAAGAATCATGGAATTCATTTGCATACATAATGGAAGGTGAAGGTGTTTTTGGTTCACCAAATTCATCACCAATTATGGCTCACCATGTCATTGTTTTCACTCAAGGTGATGGACTTAGTGTTTGGAATAACTCTTCAAAACCTTTGAGATTTGTGTTGATTGGTGGACAACCATTGAATGAACCTGTGGCTCAGTATGGACCATTTGTCATGAATACACAATCTGAGATTGAGAAGACTCTTGAAGACTATCAAAATGGTAGAAATGGATTTGAGATGAGGCTAAATTGGAGATCTCAATAG 879 0.4061 MSGISYSAFITPRLVLNKFLAKSQREGVGAIVRRGIGRSELRNLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLEGGMTHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEANNNGLQLWINLKSNDKMIEPNYQELPSENIPSGEKDGVEVRVIAGESMGVNSPVYTRTPTMFLDFTMRPGTQLHQNIQESWNSFAYIMEGEGVFGSPNSSPIMAHHVIVFTQGDGLSVWNNSSKPLRFVLIGGQPLNEPVAQYGPFVMNTQSEIEKTLEDYQNGRNGFEMRLNWRSQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00022 292 Pfam Pirin 33 124 IPR003829 -
Trre13g00022 292 CDD cupin_pirin_C 174 250 - -
Trre13g00022 292 CDD cupin_pirin_N 32 126 - -
Trre13g00022 292 PIRSF Pirin 11 290 IPR012093 -
Trre13g00022 292 FunFam pirin 26 160 - -
Trre13g00022 292 Gene3D Jelly Rolls 146 251 IPR014710 -
Trre13g00022 292 PANTHER PIRIN-RELATED 8 291 IPR012093 -
Trre13g00022 292 SUPERFAMILY RmlC-like cupins 13 290 IPR011051 -
Trre13g00022 292 Gene3D Jelly Rolls 26 278 IPR014710 -
Trre13g00022 292 Pfam Pirin C-terminal cupin domain 177 282 IPR008778 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00022 Trre-Chr13 239594 241341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00022 4 285 Calmodulin-binding Proteins AT3G59220 64.789 8.83e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00022 K06911 - gmx:100775597 499.59