Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00018 ATGGATATTAATACTACTGGCAAGAGCATGAAGCAGGGGAACAAGAAGTCAGGCCTGATCACAAAAACATGGGAGAGATGCAAGTCCATAGGAAGAGGAGGGCACAAAAGTAAGTATCCATCATCGGTGACTCCAACAACAAGAAGGAGCAAATCATGGCCTAATTTGCGAGGCGGAAAGAAAGGCGGTGTTGTGGCTCCGGTAGGATGCTTTTCGGTTTACGTTGGGCCTCAAATGCAAAGGTTTGTGATCAAAACTGAGTATGCTAACCATCCTTTGTTCAAGATGTTGCTTGAAGAAGCTGAATCAGAATATGGTTATAGCTGCCAAGGACCTTTGGCCCTTCCTTGTAATGTTGATGTCTTTTACAAGGTGTTGATGGAAATGGATAGTGAAACTCCTCCTCCTCCTCCTCGTGGTTGTGCTTTCTTAAACCGCTCTCGCTCTTCTTATCATCTTCTTAGCCCTTCCAGAATGATTGTCGTAAACGACTTCTGA 498 0.4458 MDINTTGKSMKQGNKKSGLITKTWERCKSIGRGGHKSKYPSSVTPTTRRSKSWPNLRGGKKGGVVAPVGCFSVYVGPQMQRFVIKTEYANHPLFKMLLEEAESEYGYSCQGPLALPCNVDVFYKVLMEMDSETPPPPPRGCAFLNRSRSSYHLLSPSRMIVVNDF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00018 165 Pfam Auxin responsive protein 52 126 IPR003676 GO:0009733
Trre13g00018 165 MobiDBLite consensus disorder prediction 39 53 - -
Trre13g00018 165 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 47 126 IPR003676 GO:0009733
Trre13g00018 165 MobiDBLite consensus disorder prediction 30 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00018 Trre-Chr13 217259 217756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00018 66 131 Calmodulin-binding Proteins AT5G20810 46.970 4.83e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00018 K14488 - gmx:100777217 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00018 13 217259 217756 Trre13g00018 13 217259 217756 ECH