Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00015 ATGATGAATTTTGTTAAGAAGAATGGTGAAGTGAGACTGCCTCCAGGGTTCCGTTTCCACCCAACAGATGAAGAACTTGTTGTTCAGTATTTGAAGCGTAAGGTCTTCTCTTTACCCTTACCCGCTTCCATCATTCCTCAGGTTGATCTTTGCAAGTCTGATCCATGGGATTTACCAGGTGATTTGGAACAAGAGAGATACTTTTTCAGCACTAAAGAAGCCAAATACCCAAATGGTAACAGATCCAACAGAGCTACTAACTCTGGTTACTGGAAAGCAACTGGTTTGGATAAACAAATCTCCAAATCTTCTGCTACTCAACTTGTTGTTGGGATGAAGAAGACTCTTGTTTTCTACACAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCACGAATATCGCCTCACTCCCTCTCACTACTCTAATCCCATCAATGAAAATTGGGTATTGTGTCGCATATTTCTCAAGAGAAGAGCTGGTTCTGGTTCTACTTGTAAAAATGGAGGAGGAGATGAGGACACTAGTATTGTCACACTTGCAGACACAAGTCGTCTGTTGAGACTCAAACCCAAAGGCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGGACAACAACAACAACTCAAGTTGTTCAAAGGTGGTGGTTTTCTATGACTTTTTGGCACAGAAAAACAACAACAACACTGATGCCTCCTCCTCCTCCTCCTCCTCAATCTCAATCTCACCAGCTACAAGTGGAATCACTGATGAATTGGGTCAACATGAAAATGAAGACAGCAGTAGCTCATTCACAATCAACCCAAATACTAAACCTTAA 828 0.4275 MMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSLPLPASIIPQVDLCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQISKSSATQLVVGMKKTLVFYTGKPPHGSRTDWIMHEYRLTPSHYSNPINENWVLCRIFLKRRAGSGSTCKNGGGDEDTSIVTLADTSRLLRLKPKGKQQQQQQQQQVDNNNNSSCSKVVVFYDFLAQKNNNNTDASSSSSSSISISPATSGITDELGQHENEDSSSSFTINPNTKP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00015 275 SUPERFAMILY NAC domain 9 159 IPR036093 GO:0003677|GO:0006355
Trre13g00015 275 Pfam No apical meristem (NAM) protein 14 138 IPR003441 GO:0003677|GO:0006355
Trre13g00015 275 Gene3D NAC domain 22 163 IPR036093 GO:0003677|GO:0006355
Trre13g00015 275 MobiDBLite consensus disorder prediction 230 254 - -
Trre13g00015 275 MobiDBLite consensus disorder prediction 230 275 - -
Trre13g00015 275 ProSiteProfiles NAC domain profile. 13 159 IPR003441 GO:0003677|GO:0006355
Trre13g00015 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 240 - -
Trre13g00015 275 MobiDBLite consensus disorder prediction 261 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00015 Trre-Chr13 178298 179298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00015 7 265 NAC Transcription Factor Family AT5G13180 55.172 5.72e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g00015 NAM 6.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00015 - - var:108321729 295.049