Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04881 ATGTCTGTGGATGTTAATTCCAGTCTTCAATCTGCATTATTTTGTCGATCCGATACTTGCAACTCAAGTATGTCGACGCAGTTGGCCATGATTCTTATAGACAAGGAAAGCCATATCTTATCTGCAATCAAGAAACAAAGACAAAATGGCATCAAAGAGGACACATTAAACTTTCCAAAGATTTTTCTCCTGGCCACCCATCTTAGTCCTAGTGAACGCAACGAGCTGAAGTGGGCTGGTATCATAGATGATATACTAATGAAGCCTCTTTGGCTAAGTGTTTTGATTAACTACTACAGAAAGAAATTATCAGAACTTGGAAATTTATTAATAGACAAACGAATTTTGGTGGTTGATGATAATGCGGTGAACAGAAAAGTTGCAGAAGGTGTTCTGCAGAAATATGGGGCAGTAGTTACATGTGTTGAGGGCGGTAAGACTGCTCTAAAGATGCTTAAACCATCCCATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCGGAAATGGATGGTTTTGAGGCGACGAGGAAAATCCGTCATATGGAGAACTTGGTAAATGAAAAAATCGTATGCGGTGAAGCATCAGCAAAGATGTTTGGTAACATTTCTTATTGGCGCACTCCAGTTCTAGCTATGACAGCTGATGCAACTCAGGCATCAGTTGAAGAATGCAAAAAATGTGGGATGGATGATTACGTGTCAAAGCCATTTGAAGAAGAGCATTTCTATATGGCAGTTGCACGTGTCTTTTTGCCACATTACAAGTCCTTCCGATTGAGATCGATCGAGATGCGACGTCCTCCTCTCCCCGGCAACTTCATTGCCACCATGTCCAACCATATTACTAACCTAGGCTTTCCAACAAACATCTTCAATTCCCAAACCTACTTTCTCTCTGGCTACTTGGACAAGAGTTTCGCCTCATTGCTACGAATTCTTTCACCCTACACCGATGATCACAAACTCGAGAAGGTTTTTTATTTTTTGACAGAACTCGAGAAGGTTTTATTGCTTGGTATCAACTTGAATTTCTTCATCTCCTTCGCTAACTGTCAACCAAATGAGTTCTACAAATTTCTGAAACATCTAAGAATCCCTGCAGGACAAGGTGAGCTTCATAAGATTGCAATACAGGACAAACTCAACACAAATATCTATGATCAGCACAGACAATTAAATTAG 1185 0.4008 MSVDVNSSLQSALFCRSDTCNSSMSTQLAMILIDKESHILSAIKKQRQNGIKEDTLNFPKIFLLATHLSPSERNELKWAGIIDDILMKPLWLSVLINYYRKKLSELGNLLIDKRILVVDDNAVNRKVAEGVLQKYGAVVTCVEGGKTALKMLKPSHNFDACFMDLQMPEMDGFEATRKIRHMENLVNEKIVCGEASAKMFGNISYWRTPVLAMTADATQASVEECKKCGMDDYVSKPFEEEHFYMAVARVFLPHYKSFRLRSIEMRRPPLPGNFIATMSNHITNLGFPTNIFNSQTYFLSGYLDKSFASLLRILSPYTDDHKLEKVFYFLTELEKVLLLGINLNFFISFANCQPNEFYKFLKHLRIPAGQGELHKIAIQDKLNTNIYDQHRQLN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04881 394 CDD REC_hyHK_CKI1_RcsC-like 115 247 - -
Trre12g04881 394 PANTHER TWO-COMPONENT HISTIDINE KINASE 20 241 - -
Trre12g04881 394 SMART REC_2 113 247 IPR001789 GO:0000160
Trre12g04881 394 Gene3D - 112 277 - -
Trre12g04881 394 ProSiteProfiles Response regulatory domain profile. 114 251 IPR001789 GO:0000160
Trre12g04881 394 Pfam Response regulator receiver domain 115 246 IPR001789 GO:0000160
Trre12g04881 394 SUPERFAMILY CheY-like 112 250 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04881 Trre-Chr12 62188840 62190470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04881 1 253 Miscellaneous Gene Families AT5G35750 54.779 5.53e-83 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g04881 Response_reg 3.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04881 K14489 - gmx:100805107 364.77