Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04874 ATGTGGAAGGGGAGTAGAAAGGGAGGTGGAGGAGGAGGAGGAGGAAATGGATTGGTGGCAGTGGCTATTGACAAAGATAAAGGAAGCCAATACGCTCTTAAATGGGCAGCTGATAATCTTCTCAACAGAGGCCAAACCGTTATTCTAATCCATGTTTCCCTCGTCGCCGGCACCACACCCGCTTCTTCCAGAGGTAGCGAAGCCGCCATTATATGTAACGTCAGCAGTACTTCAGCTGCATCATCTCCACAAAGAAATCAACTTGATAACGCTACCAAGGATCTCTTTCTTACCTTCCATTGCTATTGCACACGCAAAGATATACAATGTCTCGATGTCCTACTTGAAGACACTGATGTTGTCAAAGCAATAACAGAATATGTTTCTCATGCTGCAATTGAGAACTTGGTCATTGGTTCACCGTCAAGGCATGGATTTATTAGGTTTAAGTCATCAAGTACGCCAAGCAGCATATCAAAGGGGGCGCCAGATTTCTGTAATGTTTTTGTCATATCTAAGGGGAAAATCTCATCAGTTCGGAACTCTTCTCGTCCGGCCCCGCATACCTCCCCACTTCTGAGCCATATACATAACAATATAAATAATCAGGATTTAAATCAATCTGCAGATCAGATATGCTCTAGACGTATGAATTTGAGAGACAGGACGTCGATGAAACCTCACGGTTGGCACGATGAATCCACAAAATCTCCATTTAGAAGAGGAGGAAGAGGCACGAGTGGAATGTTATGTGTAGACTTCACAGAATCAGACACAGACATATCATTTGTAAGCTCTGGGAGGCCAAGCAGTGCTTGTTCATCCTCTTTTTATGACTACATTGACTCCGGTCGAACTTCACGAGTTTCTACCAGTTCAGATCGCAGCTTTGGATCCAACCGATTAGGAATCAAGTTCACTGAACCCGGTTCCCCAGATACCTCTTTTCCACAAGATACTAGTAGAACATCATTTTCATATTCATCTCAGAACATGGATGAAACAGAAGCTGATATGAGGAGACTGAAGCTTGAGTTAAAACAAACAATGGAAATGTACAATACAGCATGCAGAGAAGCGCTTACAGCACAACACAAGTTAATGGAGATGAGCAACTGGAAAATTGAAGAAGAAAAAAAATTAGAAGAGTCACAACTGTCCCAAGAAGCTGCACTGGCAATAGCCGAGAAAGAGAAAGCAAGAAGTAAGGCAGCCATGGAAACAGCTGCAGCAGCTAGAAAAATAGCAAACGTGGAATCACATAGAAAATCAAGTGTTCCAGTTAAGTCTCTTAAAGAAGCAGAGGACATGAGGAAGCTATTGGATAATTTAGCCCAAACTGATGTAAGATATAGGAGATACAATATTGAGGAGATTGAAGCAGCCACAAACATGTTTTCTGAAAAACTAAAAATTGGGGAAGGTGGTTATGGACCTGTTTATAAATGTTACCTTGATCACACTCCAGTGGCCGTGAAGGTTTTAAGTCCTGATGCGGCTCAAGGGAAATCACAGTTTCAACAAGAGGTTGACATACTGAGTTGTATGCGCCACCCAAACTTGGTGCTTCTTTTAGGAGCGTGTCCAGAGTATGGTATATTGGTTTATGAATATATGGCGAATGGAAGCTTAGAAGATTGTCTGAATCGAAAAAAGAAGGGTGGTAGGGTTCTGTGTTGGCAGCTGAGGTTCCGGATTGCTGCAGAGATAGCCACGGGATTGCTATTCCTACATCAGACGAAGCCTGAACCTTTGGTGCACCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAGAATTATGTATGTAAGATTAGTGATGTTGGATTGGCAAGGCTGGTCCCTGTGATGGCTGAAAATGTAACACAGTGTCGCATGACATCGGCAGCGGGAACATTCTGTTATATTGATCCCGAGTATCAACAAACAGGAATGCTTGGTGTAAAGTCGGACGTTTATTCTCTGGGGATCATATTTCTACAGTTATTGACTGGAAGACATCCAATGGGATTGGCTCACCATGCTGAGCAGTCTATTGAGAATGGCACATTTGAGGAAATGCTTGACCAATCTTTATCTCACTGGCCCATTCAAGAAGCCCTAACCCTTGCAAATATAGCTGTAAATTGTGCACAACTCAGACGAAAAGATCGCCCAGACCTTGCCAAAGTAGTGTTGCCTGAGCTTGTTAAACTCAGAGAGTTTGCTGAAGAAAATATGGGTCCCATCTTTTTAGGAGGAGGCATTACTTTTAGCAGTAGTGGTAGTACTGAACCTTCCCCCAACCACAGTGAAGCTTCTATGCAGCAGGATGTGATGAGCGACCCACAACTTATAAATTCAGGAAGCTCAATAAGTCCACCAACTTCATCAACTGCAACAGAAGAAAATCCTTAA 2397 0.4305 MWKGSRKGGGGGGGGNGLVAVAIDKDKGSQYALKWAADNLLNRGQTVILIHVSLVAGTTPASSRGSEAAIICNVSSTSAASSPQRNQLDNATKDLFLTFHCYCTRKDIQCLDVLLEDTDVVKAITEYVSHAAIENLVIGSPSRHGFIRFKSSSTPSSISKGAPDFCNVFVISKGKISSVRNSSRPAPHTSPLLSHIHNNINNQDLNQSADQICSRRMNLRDRTSMKPHGWHDESTKSPFRRGGRGTSGMLCVDFTESDTDISFVSSGRPSSACSSSFYDYIDSGRTSRVSTSSDRSFGSNRLGIKFTEPGSPDTSFPQDTSRTSFSYSSQNMDETEADMRRLKLELKQTMEMYNTACREALTAQHKLMEMSNWKIEEEKKLEESQLSQEAALAIAEKEKARSKAAMETAAAARKIANVESHRKSSVPVKSLKEAEDMRKLLDNLAQTDVRYRRYNIEEIEAATNMFSEKLKIGEGGYGPVYKCYLDHTPVAVKVLSPDAAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLEDCLNRKKKGGRVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPVMAENVTQCRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHAEQSIENGTFEEMLDQSLSHWPIQEALTLANIAVNCAQLRRKDRPDLAKVVLPELVKLREFAEENMGPIFLGGGITFSSSGSTEPSPNHSEASMQQDVMSDPQLINSGSSISPPTSSTATEENP 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04874 798 Gene3D Phosphorylase Kinase; domain 1 444 538 - -
Trre12g04874 798 Gene3D HUPs 18 171 IPR014729 -
Trre12g04874 798 MobiDBLite consensus disorder prediction 311 333 - -
Trre12g04874 798 MobiDBLite consensus disorder prediction 285 300 - -
Trre12g04874 798 MobiDBLite consensus disorder prediction 223 239 - -
Trre12g04874 798 SUPERFAMILY Protein kinase-like (PK-like) 450 725 IPR011009 -
Trre12g04874 798 ProSiteProfiles Protein kinase domain profile. 466 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04874 798 Pfam Protein kinase domain 467 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04874 798 MobiDBLite consensus disorder prediction 223 242 - -
Trre12g04874 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Trre12g04874 798 Gene3D Transferase(Phosphotransferase) domain 1 539 740 - -
Trre12g04874 798 PANTHER OS02G0152300 PROTEIN 19 784 - -
Trre12g04874 798 MobiDBLite consensus disorder prediction 285 334 - -
Trre12g04874 798 SMART serkin_6 466 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04874 798 Coils Coil 332 359 - -
Trre12g04874 798 MobiDBLite consensus disorder prediction 751 798 - -
Trre12g04874 798 CDD STK_N 18 174 - -
Trre12g04874 798 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 438 538 - -
Trre12g04874 798 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 171 - -
Trre12g04874 798 Pfam Universal stress protein family 19 163 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04874 Trre-Chr12 62140179 62144466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04874 1 777 Receptor kinase-like Gene Family AT1G78940 54.329 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre12g04874 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04874 - - gmx:100801601 1068.53