Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04873 ATGTGGAAGGGGAGTAGAAAGGGAGGTGGAGGAGGAGGAGGAGGAAATGGATTGGTGGCAGTGGCTATTGACAAAGATAAAGGAAGCCAATACGCTCTTAAATGGGCAGCTGATAATCTTCTCAACAGAGGCCAAACCGTTATTCTAATCCATGTTTCCCTCGTCGCCGGCACCACACCCGCTTCTTCCAGAGGTAGCGAAGCCGCCATTATATGTAACGTCAGCAGTACTTCAGCTGCATCATCTCCACAAAGAAATCAACTTGATAACGCTACCAAGGATCTCTTTCTTACCTTCCATTGCTATTGCACACGCAAAGATATACAATGTCTCGATGTCCTACTTGAAGACACTGATGTTGTCAAAGCAATAACAGAATATGTTTCTCATGCTGCAATTGAGAACTTGGTCATTGGTTCACCGTCAAGGCATGGATTTATTAGGTTTAAGTCATCAAGTACGCCAAGCAGCATATCAAAGGGGGCGCCAGATTTCTGTAATGTTTTTGTCATATCTAAGGGGAAAATCTCATCAGTTCGGAACTCTTCTCGTCCGGCCCCGCATACCTCCCCACTTCTGAGCCATATACATAACAATATAAATAATCAGGATTTAAATCAATCTGCAGATCAGATATGCTCTAGACGTATGAATTTGAGAGACAGGACGTCGATGAAACCTCACGGTTGGCACGATGAATCCACAAAATCTCCATTTAGAAGAGGAGGAAGAGGCACGAGTGGAATGTTATGTGTAGACTTCACAGAATCAGACACAGACATATCATTTGTAAGCTCTGGGAGGCCAAGCAGTGCTTGTTCATCCTCTTTTTATGACTACATTGACTCCGGTCGAACTTCACGAGTTTCTACCAGTTCAGATCGCAGCTTTGGATCCAACCGATTAGGAATCAAGTTCACTGAACCCGGTTCCCCAGATACCTCTTTTCCACAAGATACTAGTAGAACATCATTTTCATATTCATCTCAGAACATGGATGAAACAGAAGCTGATATGAGGAGACTGAAGCTTGAGTTAAAACAAACAATGGAAATGTACAATACAGCATGCAGAGAAGCGCTTACAGCACAACACAAGTTAATGGAGATGAGCAACTGGAAAATTGAAGAAGAAAAAAAATTAGAAGAGTCACAACTGTCCCAAGAAGCTGCACTGGCAATAGCCGAGAAAGAGAAAGCAAGAAGTAAGGCAGCCATGGAAACAGCTGCAGCAGCTAGAAAAATAGCAAACGTGGAATCACATAGAAAATCAAGTGTTCCAGTTAAGTCTCTTAAAGAAGCAGAGGACATGAGGAAGCTATTGGATAATTTAGCCCAAACTGATGTAAGATATAGGAGATACAATATTGAGGAGATTGAAGCAGCCACAAACATGTTTTCTGAAAAACTAAAAATTGGGGAAGGTGGTTATGGACCTGTTTATAAATGTTACCTTGATCACACTCCAGTGGCCGTGAAGGTTTTAAGTCCTGATGCGGCTCAAGGGAAATCACAGTTTCAACAAGAGATAGTTATCTCTCCGCAGGTTGACATACTGAGTTGTATGCGCCACCCAAACTTGGTGCTTCTTTTAGGAGCGTGTCCAGAGTATGGTATATTGGTTTATGAATATATGGCGAATGGAAGCTTAGAAGATTGTCTGAATCGAAAAAAGAAGGGTGGTAGGGTTCTGTGTTGGCAGCTGAGGTTCCGGATTGCTGCAGAGATAGCCACGGGATTGCTATTCCTACATCAGACGAAGCCTGAACCTTTGGTGCACCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAGAATTATGTATGTAAGATTAGTGATGTTGGATTGGCAAGGCTGGTCCCTGTGATGGCTGAAAATGTAACACAGTGTCGCATGACATCGGCAGCGGGAACATTCTGTTATATTGATCCCGAGTATCAACAAACAGGAATGCTTGGTGTAAAGTCGGACGTTTATTCTCTGGGGATCATATTTCTACAGTTATTGACTGGAAGACATCCAATGGGATTGGCTCACCATGCTGAGCAGTCTATTGAGAATGGCACATTTGAGGAAATGCTTGACCAATCTTTATCTCACTGGCCCATTCAAGAAGCCCTAACCCTTGCAAATATAGCTGTAAATTGTGCACAACTCAGACGAAAAGATCGCCCAGACCTTGCCAAAGTAGTGTTGCCTGAGCTTGTTAAACTCAGAGAGTTTGCTGAAGAAAATATGGGTCCCATCTTTTTAGGAGGAGGCATTACTTTTAGCAGTAGTGGTAGTACTGAACCTTCCCCCAACCACAGTGAAGCTTCTATGCAGCAGGATGTGATGAGCGACCCACAACTTATAAATTCAGGAAGCTCAATAAGTCCACCAACTTCATCAACTGCAACAGAAGAAAATCCTTAA 2415 0.4306 MWKGSRKGGGGGGGGNGLVAVAIDKDKGSQYALKWAADNLLNRGQTVILIHVSLVAGTTPASSRGSEAAIICNVSSTSAASSPQRNQLDNATKDLFLTFHCYCTRKDIQCLDVLLEDTDVVKAITEYVSHAAIENLVIGSPSRHGFIRFKSSSTPSSISKGAPDFCNVFVISKGKISSVRNSSRPAPHTSPLLSHIHNNINNQDLNQSADQICSRRMNLRDRTSMKPHGWHDESTKSPFRRGGRGTSGMLCVDFTESDTDISFVSSGRPSSACSSSFYDYIDSGRTSRVSTSSDRSFGSNRLGIKFTEPGSPDTSFPQDTSRTSFSYSSQNMDETEADMRRLKLELKQTMEMYNTACREALTAQHKLMEMSNWKIEEEKKLEESQLSQEAALAIAEKEKARSKAAMETAAAARKIANVESHRKSSVPVKSLKEAEDMRKLLDNLAQTDVRYRRYNIEEIEAATNMFSEKLKIGEGGYGPVYKCYLDHTPVAVKVLSPDAAQGKSQFQQEIVISPQVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLEDCLNRKKKGGRVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPVMAENVTQCRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHAEQSIENGTFEEMLDQSLSHWPIQEALTLANIAVNCAQLRRKDRPDLAKVVLPELVKLREFAEENMGPIFLGGGITFSSSGSTEPSPNHSEASMQQDVMSDPQLINSGSSISPPTSSTATEENP 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04873 804 Gene3D Transferase(Phosphotransferase) domain 1 545 746 - -
Trre12g04873 804 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 438 544 - -
Trre12g04873 804 MobiDBLite consensus disorder prediction 757 804 - -
Trre12g04873 804 SMART serkin_6 466 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04873 804 Gene3D HUPs 18 171 IPR014729 -
Trre12g04873 804 MobiDBLite consensus disorder prediction 311 333 - -
Trre12g04873 804 MobiDBLite consensus disorder prediction 285 300 - -
Trre12g04873 804 MobiDBLite consensus disorder prediction 223 239 - -
Trre12g04873 804 Pfam Protein kinase domain 467 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04873 804 MobiDBLite consensus disorder prediction 223 242 - -
Trre12g04873 804 Gene3D Phosphorylase Kinase; domain 1 444 544 - -
Trre12g04873 804 ProSiteProfiles Protein kinase domain profile. 466 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04873 804 MobiDBLite consensus disorder prediction 285 334 - -
Trre12g04873 804 PANTHER OS02G0152300 PROTEIN 19 790 - -
Trre12g04873 804 Coils Coil 332 359 - -
Trre12g04873 804 SUPERFAMILY Protein kinase-like (PK-like) 450 731 IPR011009 -
Trre12g04873 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Trre12g04873 804 CDD STK_N 18 174 - -
Trre12g04873 804 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 171 - -
Trre12g04873 804 Pfam Universal stress protein family 19 163 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04873 Trre-Chr12 62140179 62144466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04873 1 783 Receptor kinase-like Gene Family AT1G78940 53.923 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre12g04873 Pkinase 2.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04873 - - gmx:100818435 1070.84