Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04872 ATGTGGAAGGGGAGTAGAAAGGGAGGTGGAGGAGGAGGAGGAGGAAATGGATTGGTGGCAGTGGCTATTGACAAAGATAAAGGAAGCCAATACGCTCTTAAATGGGCAGCTGATAATCTTCTCAACAGAGGCCAAACCGTTATTCTAATCCATGTTTCCCTCGTCGCCGGCACCACACCCGCTTCTTCCAGAGGTAGCGAAGCCGCCATTATATGTAACGTCAGCAGTACTTCAGCTGCATCATCTCCACAAAGAAATCAACTTGATAACGCTACCAAGGATCTCTTTCTTACCTTCCATTGCTATTGCACACGCAAAGATATACAATGTCTCGATGTCCTACTTGAAGACACTGATGTTGTCAAAGCAATAACAGAATATGTTTCTCATGCTGCAATTGAGAACTTGGTCATTGGTTCACCGTCAAGGCATGGATTTATTAGGTTTAAGTCATCAAGTACGCCAAGCAGCATATCAAAGGGGGCGCCAGATTTCTGTAATGTTTTTGTCATATCTAAGGGGAAAATCTCATCAGTTCGGAACTCTTCTCGTCCGGCCCCGCATACCTCCCCACTTCTGAGCCATATACATAACAATATAAATAATCAGGATTTAAATCAATCTGCAGATCAGATATGCTCTAGACGTATGAATTTGAGAGACAGGACGTCGATGAAACCTCACGGTTGGCACGATGAATCCACAAACAGATCTCCATTTAGAAGAGGAGGAAGAGGCACGAGTGGAATGTTATGTGTAGACTTCACAGAATCAGACACAGACATATCATTTGTAAGCTCTGGGAGGCCAAGCAGTGCTTGTTCATCCTCTTTTTATGACTACATTGACTCCGGTCGAACTTCACGAGTTTCTACCAGTTCAGATCGCAGCTTTGGATCCAACCGATTAGGAATCAAGTTCACTGAACCCGGTTCCCCAGATACCTCTTTTCCACAAGATACTAGTAGAACATCATTTTCATATTCATCTCAGAACATGGATGAAACAGAAGCTGATATGAGGAGACTGAAGCTTGAGTTAAAACAAACAATGGAAATGTACAATACAGCATGCAGAGAAGCGCTTACAGCACAACACAAGTTAATGGAGATGAGCAACTGGAAAATTGAAGAAGAAAAAAAATTAGAAGAGTCACAACTGTCCCAAGAAGCTGCACTGGCAATAGCCGAGAAAGAGAAAGCAAGAAGTAAGGCAGCCATGGAAACAGCTGCAGCAGCTAGAAAAATAGCAAACGTGGAATCACATAGAAAATCAAGTGTTCCAGTTAAGTCTCTTAAAGAAGCAGAGGACATGAGGAAGCTATTGGATAATTTAGCCCAAACTGATGTAAGATATAGGAGATACAATATTGAGGAGATTGAAGCAGCCACAAACATGTTTTCTGAAAAACTAAAAATTGGGGAAGGTGGTTATGGACCTGTTTATAAATGTTACCTTGATCACACTCCAGTGGCCGTGAAGGTTTTAAGTCCTGATGCGGCTCAAGGGAAATCACAGTTTCAACAAGAGGTTGACATACTGAGTTGTATGCGCCACCCAAACTTGGTGCTTCTTTTAGGAGCGTGTCCAGAGTATGGTATATTGGTTTATGAATATATGGCGAATGGAAGCTTAGAAGATTGTCTGAATCGAAAAAAGAAGGGTGGTAGGGTTCTGTGTTGGCAGCTGAGGTTCCGGATTGCTGCAGAGATAGCCACGGGATTGCTATTCCTACATCAGACGAAGCCTGAACCTTTGGTGCACCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAGAATTATGTATGTAAGATTAGTGATGTTGGATTGGCAAGGCTGGTCCCTGTGATGGCTGAAAATGTAACACAGTGTCGCATGACATCGGCAGCGGGAACATTCTGTTATATTGATCCCGAGTATCAACAAACAGGAATGCTTGGTGTAAAGTCGGACGTTTATTCTCTGGGGATCATATTTCTACAGTTATTGACTGGAAGACATCCAATGGGATTGGCTCACCATGCTGAGCAGTCTATTGAGAATGGCACATTTGAGGAAATGCTTGACCAATCTTTATCTCACTGGCCCATTCAAGAAGCCCTAACCCTTGCAAATATAGCTGTAAATTGTGCACAACTCAGACGAAAAGATCGCCCAGACCTTGCCAAAGTAGTGTTGCCTGAGCTTGTTAAACTCAGAGAGTTTGCTGAAGAAAATATGGGTCCCATCTTTTTAGGAGGAGGCATTACTTTTAGCAGTAGTGGTAGTACTGAACCTTCCCCCAACCACAGTGAAGCTTCTATGCAGCAGGATGTGATGAGCGACCCACAACTTATAAATTCAGGAAGCTCAATAAGTCCACCAACTTCATCAACTGCAACAGAAGAAAATCCTTAA 2400 0.4308 MWKGSRKGGGGGGGGNGLVAVAIDKDKGSQYALKWAADNLLNRGQTVILIHVSLVAGTTPASSRGSEAAIICNVSSTSAASSPQRNQLDNATKDLFLTFHCYCTRKDIQCLDVLLEDTDVVKAITEYVSHAAIENLVIGSPSRHGFIRFKSSSTPSSISKGAPDFCNVFVISKGKISSVRNSSRPAPHTSPLLSHIHNNINNQDLNQSADQICSRRMNLRDRTSMKPHGWHDESTNRSPFRRGGRGTSGMLCVDFTESDTDISFVSSGRPSSACSSSFYDYIDSGRTSRVSTSSDRSFGSNRLGIKFTEPGSPDTSFPQDTSRTSFSYSSQNMDETEADMRRLKLELKQTMEMYNTACREALTAQHKLMEMSNWKIEEEKKLEESQLSQEAALAIAEKEKARSKAAMETAAAARKIANVESHRKSSVPVKSLKEAEDMRKLLDNLAQTDVRYRRYNIEEIEAATNMFSEKLKIGEGGYGPVYKCYLDHTPVAVKVLSPDAAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLEDCLNRKKKGGRVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPVMAENVTQCRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHAEQSIENGTFEEMLDQSLSHWPIQEALTLANIAVNCAQLRRKDRPDLAKVVLPELVKLREFAEENMGPIFLGGGITFSSSGSTEPSPNHSEASMQQDVMSDPQLINSGSSISPPTSSTATEENP 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04872 799 MobiDBLite consensus disorder prediction 286 335 - -
Trre12g04872 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Trre12g04872 799 MobiDBLite consensus disorder prediction 223 239 - -
Trre12g04872 799 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 439 539 - -
Trre12g04872 799 MobiDBLite consensus disorder prediction 312 334 - -
Trre12g04872 799 Coils Coil 333 360 - -
Trre12g04872 799 SUPERFAMILY Protein kinase-like (PK-like) 451 726 IPR011009 -
Trre12g04872 799 MobiDBLite consensus disorder prediction 286 301 - -
Trre12g04872 799 Gene3D HUPs 18 171 IPR014729 -
Trre12g04872 799 PANTHER OS02G0152300 PROTEIN 19 785 - -
Trre12g04872 799 SMART serkin_6 467 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04872 799 MobiDBLite consensus disorder prediction 752 799 - -
Trre12g04872 799 Gene3D Transferase(Phosphotransferase) domain 1 540 741 - -
Trre12g04872 799 Gene3D Phosphorylase Kinase; domain 1 445 539 - -
Trre12g04872 799 ProSiteProfiles Protein kinase domain profile. 467 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04872 799 Pfam Protein kinase domain 468 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04872 799 MobiDBLite consensus disorder prediction 223 246 - -
Trre12g04872 799 CDD STK_N 18 174 - -
Trre12g04872 799 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 171 - -
Trre12g04872 799 Pfam Universal stress protein family 19 163 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04872 Trre-Chr12 62140179 62144466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04872 1 778 Receptor kinase-like Gene Family AT1G78940 54.261 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre12g04872 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04872 - - gmx:100801601 1062.75