Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04871 ATGTGGAAGGGGAGTAGAAAGGGAGGTGGAGGAGGAGGAGGAGGAAATGGATTGGTGGCAGTGGCTATTGACAAAGATAAAGGAAGCCAATACGCTCTTAAATGGGCAGCTGATAATCTTCTCAACAGAGGCCAAACCGTTATTCTAATCCATGTTTCCCTCGTCGCCGGCACCACACCCGCTTCTTCCAGAGGTAGCGAAGCCGCCATTATATGTAACGTCAGCAGTACTTCAGCTGCATCATCTCCACAAAGAAATCAACTTGATAACGCTACCAAGGATCTCTTTCTTACCTTCCATTGCTATTGCACACGCAAAGATATACAATGTCTCGATGTCCTACTTGAAGACACTGATGTTGTCAAAGCAATAACAGAATATGTTTCTCATGCTGCAATTGAGAACTTGGTCATTGGTTCACCGTCAAGGCATGGATTTATTAGGTGTGTGAGGTTTAAGTCATCAAGTACGCCAAGCAGCATATCAAAGGGGGCGCCAGATTTCTGTAATGTTTTTGTCATATCTAAGGGGAAAATCTCATCAGTTCGGAACTCTTCTCGTCCGGCCCCGCATACCTCCCCACTTCTGAGCCATATACATAACAATATAAATAATCAGGATTTAAATCAATCTGCAGATCAGATATGCTCTAGACGTATGAATTTGAGAGACAGGACGTCGATGAAACCTCACGGTTGGCACGATGAATCCACAAAATCTCCATTTAGAAGAGGAGGAAGAGGCACGAGTGGAATGTTATGTGTAGACTTCACAGAATCAGACACAGACATATCATTTGTAAGCTCTGGGAGGCCAAGCAGTGCTTGTTCATCCTCTTTTTATGACTACATTGACTCCGGTCGAACTTCACGAGTTTCTACCAGTTCAGATCGCAGCTTTGGATCCAACCGATTAGGAATCAAGTTCACTGAACCCGGTTCCCCAGATACCTCTTTTCCACAAGATACTAGTAGAACATCATTTTCATATTCATCTCAGAACATGGATGAAACAGAAGCTGATATGAGGAGACTGAAGCTTGAGTTAAAACAAACAATGGAAATGTACAATACAGCATGCAGAGAAGCGCTTACAGCACAACACAAGTTAATGGAGATGAGCAACTGGAAAATTGAAGAAGAAAAAAAATTAGAAGAGTCACAACTGTCCCAAGAAGCTGCACTGGCAATAGCCGAGAAAGAGAAAGCAAGAAGTAAGGCAGCCATGGAAACAGCTGCAGCAGCTAGAAAAATAGCAAACGTGGAATCACATAGAAAATCAAGTGTTCCAGTTAAGTCTCTTAAAGAAGCAGAGGACATGAGGAAGCTATTGGATAATTTAGCCCAAACTGATGTAAGATATAGGAGATACAATATTGAGGAGATTGAAGCAGCCACAAACATGTTTTCTGAAAAACTAAAAATTGGGGAAGGTGGTTATGGACCTGTTTATAAATGTTACCTTGATCACACTCCAGTGGCCGTGAAGGTTTTAAGTCCTGATGCGGCTCAAGGGAAATCACAGTTTCAACAAGAGGTTGACATACTGAGTTGTATGCGCCACCCAAACTTGGTGCTTCTTTTAGGAGCGTGTCCAGAGTATGGTATATTGGTTTATGAATATATGGCGAATGGAAGCTTAGAAGATTGTCTGAATCGAAAAAAGAAGGGTGGTAGGGTTCTGTGTTGGCAGCTGAGGTTCCGGATTGCTGCAGAGATAGCCACGGGATTGCTATTCCTACATCAGACGAAGCCTGAACCTTTGGTGCACCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAGAATTATGTATGTAAGATTAGTGATGTTGGATTGGCAAGGCTGGTCCCTGTGATGGCTGAAAATGTAACACAGTGTCGCATGACATCGGCAGCGGGAACATTCTGTTATATTGATCCCGAGTATCAACAAACAGGAATGCTTGGTGTAAAGTCGGACGTTTATTCTCTGGGGATCATATTTCTACAGTTATTGACTGGAAGACATCCAATGGGATTGGCTCACCATGCTGAGCAGTCTATTGAGAATGGCACATTTGAGGAAATGCTTGACCAATCTTTATCTCACTGGCCCATTCAAGAAGCCCTAACCCTTGCAAATATAGCTGTAAATTGTGCACAACTCAGACGAAAAGATCGCCCAGACCTTGCCAAAGTAGTGTTGCCTGAGCTTGTTAAACTCAGAGAGTTTGCTGAAGAAAATATGGGTCCCATCTTTTTAGGAGGAGGCATTACTTTTAGCAGTAGTGGTAGTACTGAACCTTCCCCCAACCACAGTGAAGCTTCTATGCAGCAGGATGTGATGAGCGACCCACAACTTATAAATTCAGGAAGCTCAATAAGTCCACCAACTTCATCAACTGCAACAGAAGAAAATCCTTAA 2406 0.431 MWKGSRKGGGGGGGGNGLVAVAIDKDKGSQYALKWAADNLLNRGQTVILIHVSLVAGTTPASSRGSEAAIICNVSSTSAASSPQRNQLDNATKDLFLTFHCYCTRKDIQCLDVLLEDTDVVKAITEYVSHAAIENLVIGSPSRHGFIRCVRFKSSSTPSSISKGAPDFCNVFVISKGKISSVRNSSRPAPHTSPLLSHIHNNINNQDLNQSADQICSRRMNLRDRTSMKPHGWHDESTKSPFRRGGRGTSGMLCVDFTESDTDISFVSSGRPSSACSSSFYDYIDSGRTSRVSTSSDRSFGSNRLGIKFTEPGSPDTSFPQDTSRTSFSYSSQNMDETEADMRRLKLELKQTMEMYNTACREALTAQHKLMEMSNWKIEEEKKLEESQLSQEAALAIAEKEKARSKAAMETAAAARKIANVESHRKSSVPVKSLKEAEDMRKLLDNLAQTDVRYRRYNIEEIEAATNMFSEKLKIGEGGYGPVYKCYLDHTPVAVKVLSPDAAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLEDCLNRKKKGGRVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPVMAENVTQCRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHAEQSIENGTFEEMLDQSLSHWPIQEALTLANIAVNCAQLRRKDRPDLAKVVLPELVKLREFAEENMGPIFLGGGITFSSSGSTEPSPNHSEASMQQDVMSDPQLINSGSSISPPTSSTATEENP 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04871 801 SMART serkin_6 469 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04871 801 Gene3D HUPs 18 174 IPR014729 -
Trre12g04871 801 MobiDBLite consensus disorder prediction 226 242 - -
Trre12g04871 801 MobiDBLite consensus disorder prediction 288 303 - -
Trre12g04871 801 Pfam Universal stress protein family 19 154 IPR006016 -
Trre12g04871 801 PANTHER OS02G0152300 PROTEIN 19 787 - -
Trre12g04871 801 MobiDBLite consensus disorder prediction 314 336 - -
Trre12g04871 801 Gene3D Phosphorylase Kinase; domain 1 447 541 - -
Trre12g04871 801 Gene3D Transferase(Phosphotransferase) domain 1 542 743 - -
Trre12g04871 801 ProSiteProfiles Protein kinase domain profile. 469 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04871 801 MobiDBLite consensus disorder prediction 754 801 - -
Trre12g04871 801 MobiDBLite consensus disorder prediction 226 245 - -
Trre12g04871 801 SUPERFAMILY Protein kinase-like (PK-like) 453 728 IPR011009 -
Trre12g04871 801 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 441 541 - -
Trre12g04871 801 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 149 - -
Trre12g04871 801 Coils Coil 335 362 - -
Trre12g04871 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Trre12g04871 801 MobiDBLite consensus disorder prediction 288 337 - -
Trre12g04871 801 Pfam Protein kinase domain 470 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04871 801 CDD STK_N 18 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04871 Trre-Chr12 62140179 62144466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04871 1 780 Receptor kinase-like Gene Family AT1G78940 54.500 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre12g04871 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04871 - - gmx:100801601 1063.14