Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04870 ATGTCATCTTCGGATGCTGAGGCTCTATTGAAGTTCAAGGGTTCATTAACAAATGCGGTGTCCCTCAGCAGTTGGGAACCATCCATAAACCCAAAACCACCTTGCACCGGAAACATTTCCAATTGGGTGGGCTTGTTTTGCTTGAATGACAGGGTGTTGGGGTTACGCCTTGAGAGCATGGGGTTAACCGGAAACATCAATATAGAATCTCTTGCTTCAATGCCGATGTTGCGGATGGTTTCCCTGATGAACAATACCTTTGTGGGTCCCTTGCCCAACATCAAGATGCTACCCCATTTGAGGTCTGTCTACTTGTCCTATAATCATTTCTCAGGACAGATACCTGACGATGCATTTACGGGTATGCCTAGGTTGAGGAAAGTGTATTTGTCTAATAATGAGTTCACCGGTAAAATTCCATCCTCTCTCGCTATCTTGCCTACTCTCCTCGTCCTCAGGCTTGACGCAAACAAGTTTCAAGGTGAGATCCCCAATTTTCATCACAAGAATAATTTGAAGATTATCAACTTCTCTAACAATGACCTAGAGGGTCCCATCCCACCTAATTTAAGAACCTTTGACGCCTCCTCTTTTAGCGGAAACGCACTTCTATGTGGACCTCCTTTGACGAATAAGTGTCAATTAGGAAATCCCAAAATGCTCGTTATGAAAACTTTACTTATTGTGATCATGATAGCATTTATAGTAGCCATTGTGGTTTCAATATTGATCATCTCCCGCTTGAGGTCACAAAAGAAGCAGTTAAACGAAGAACATTATTCTACAACCTCAAAATTCCATACACAAGCATCTAGCAAATATGTTAAGCCTCCTGCAGTTTATGTGAAAACCAAAAGTTTGGCCGAACACTATGATCCTAGAAGTCCTAAGCCAGACCAACACAGTCATAGTCATTCCAAAAAGGAAAAGGGGGAACAAGGCAAGCTTATATTTCTCAAGAAGGATGGACTCAAATTTGATTTGCAGGATTTGCTAAGGGCCTCCGCTGAAATTCTAGGAAGTGCCTCATTCGGGTCATCCTACAAAGCCGTAATTTTGGACGGCCAAGCAGTGGTTGTCAAGAGGTACAAGCAAATGAACAATGTGCAAAGAGAAGAGTTCCATGAACATATGAGAAGGCTAGGAAACCTCAACCATCCCAATGTTCTACCTCTCCTTTCTTATTATTATAGAAGAGAAGAAAAGCTTTTGATCTCTGCCTTTGTTCACAATGGTTGCTTGGCTAGTCATCTTCATGGTAACCACAACTACCAGAAGCCGGGACTTGATTGGGCAACCCGTTTGAAAATCGTGAAAGGTGTAGCGAGGGGTTTGTCATATCTATACAGTGCACTCCCAAGCGTGATTGTGCCTCATGGTCATCTAAAATCTTCCAATGTACTTTTGGATGAATCCTTTGAGCCTCTGCTAACTGATTATGCACTCAGTCCTTTGATCAATCTTGACCACGCACAACAAATCATCATGCCTTACAAATCCCCAGAGTATGCTCAACTTGGGCGCATTACAAAGAAAACTGACGTGTGGAGTTTTGGGATTCTAATATTGGAGATTCTGACGGGTAAATTCCCAGAGAACTATATTACACCAAGGCATAATAGTGATTCAGACTTAGCCAGTTGGGTAAATATGATGATTACCGAGAAGCGCACAAGCGATGTATTTGACGTAGAGATGGGAGGAGTAGGTACCAGTAAAGCTGAATTGCTCAAACTCTTAAAGATTGGACTTAGTTGTTGTGAGGAGAATGTGGAAAGAAGGTTGGACATCAAAGAGGCTTTGGAGCAGATTGAAGACTTGAATGAGGGTCAAACAAGTACTACTGATCATACTGTTGGAGAGTACTCTTCCTCCCTTTTCACCACCACTACTACTGAAAGGGATGCTTACAGAGCTGTGTGA 1923 0.4249 MSSSDAEALLKFKGSLTNAVSLSSWEPSINPKPPCTGNISNWVGLFCLNDRVLGLRLESMGLTGNINIESLASMPMLRMVSLMNNTFVGPLPNIKMLPHLRSVYLSYNHFSGQIPDDAFTGMPRLRKVYLSNNEFTGKIPSSLAILPTLLVLRLDANKFQGEIPNFHHKNNLKIINFSNNDLEGPIPPNLRTFDASSFSGNALLCGPPLTNKCQLGNPKMLVMKTLLIVIMIAFIVAIVVSILIISRLRSQKKQLNEEHYSTTSKFHTQASSKYVKPPAVYVKTKSLAEHYDPRSPKPDQHSHSHSKKEKGEQGKLIFLKKDGLKFDLQDLLRASAEILGSASFGSSYKAVILDGQAVVVKRYKQMNNVQREEFHEHMRRLGNLNHPNVLPLLSYYYRREEKLLISAFVHNGCLASHLHGNHNYQKPGLDWATRLKIVKGVARGLSYLYSALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPLINLDHAQQIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYITPRHNSDSDLASWVNMMITEKRTSDVFDVEMGGVGTSKAELLKLLKIGLSCCEENVERRLDIKEALEQIEDLNEGQTSTTDHTVGEYSSSLFTTTTTERDAYRAV 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04870 640 MobiDBLite consensus disorder prediction 290 311 - -
Trre12g04870 640 Pfam Leucine rich repeat N-terminal domain 3 47 IPR013210 -
Trre12g04870 640 Gene3D Ribonuclease Inhibitor 2 168 IPR032675 -
Trre12g04870 640 Pfam Leucine rich repeat 98 159 IPR001611 GO:0005515
Trre12g04870 640 Pfam Protein tyrosine and serine/threonine kinase 337 548 IPR001245 GO:0004672|GO:0006468
Trre12g04870 640 FunFam Pollen receptor-like kinase 1 409 618 - -
Trre12g04870 640 Gene3D Transferase(Phosphotransferase) domain 1 409 630 - -
Trre12g04870 640 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 609 IPR046959 -
Trre12g04870 640 FunFam pollen receptor-like kinase 1 301 408 - -
Trre12g04870 640 Gene3D Ribonuclease Inhibitor 169 213 IPR032675 -
Trre12g04870 640 SUPERFAMILY L domain-like 32 208 - -
Trre12g04870 640 SUPERFAMILY Protein kinase-like (PK-like) 337 606 IPR011009 -
Trre12g04870 640 Gene3D Phosphorylase Kinase; domain 1 299 408 - -
Trre12g04870 640 ProSiteProfiles Protein kinase domain profile. 333 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04870 Trre-Chr12 62132064 62134094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04870 4 636 Receptor kinase-like Gene Family AT5G35390 47.167 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre12g04870 PK_Tyr_Ser-Thr 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04870 - - aprc:113854862 934.095