Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04869 ATGGGCGCGCGCTCTAATTCGATTGTGCGCGCACCTGCAGCATTTAATAATAATAATGTCAAGGGCCTGGTTGTTTTTCTGGTATTATTACTACTTTCATGCCCAAGCATGTCAATGTCATCTTCGGATGCTGAGGCTCTATTGAAGTTCAAGGGTTCATTAACAAATGCGGTGTCCCTCAGCAGTTGGGAACCATCCATAAACCCAAAACCACCTTGCACCGGAAACATTTCCAATTGGGTGGGCTTGTTTTGCTTGAATGACAGGGTGTTGGGGTTACGCCTTGAGAGCATGGGGTTAACCGGAAACATCAATATAGAATCTCTTGCTTCAATGCCGATGTTGCGGATGGTTTCCCTGATGAACAATACCTTTGTGGGTCCCTTGCCCAACATCAAGATGCTACCCCATTTGAGGTCTGTCTACTTGTCCTATAATCATTTCTCAGGACAGATACCTGACGATGCATTTACGGGTATGCCTAGGTTGAGGAAAGTGTATTTGTCTAATAATGAGTTCACCGGTAAAATTCCATCCTCTCTCGCTATCTTGCCTACTCTCCTCGTCCTCAGGCTTGACGCAAACAAGTTTCAAGGTGAGATCCCCAATTTTCATCACAAGAATAATTTGAAGATTATCAACTTCTCTAACAATGACCTAGAGGGTCCCATCCCACCTAATTTAAGAACCTTTGACGCCTCCTCTTTTAGCGGAAACGCACTTCTATGTGGACCTCCTTTGACGAATAAGTGTCAATTAGGAAATCCCAAAATGCTCGTTATGAAAACTTTACTTATTGTGATCATGATAGCATTTATAGTAGCCATTGTGGTTTCAATATTGATCATCTCCCGCTTGAGGTCACAAAAGAAGCAGTTAAACGAAGAACATTATTCTACAACCTCAAAATTCCATACACAAGCATCTAGCAAATATGTTAAGCCTCCTGCAGTTTATGTGAAAACCAAAAGTTTGGCCGAACACTATGATCCTAGAAGTCCTAAGCCAGACCAACACAGTCATAGTCATTCCAAAAAGGAAAAGGGGGAACAAGGCAAGCTTATATTTCTCAAGAAGGATGGACTCAAATTTGATTTGCAGGATTTGCTAAGGGCCTCCGCTGAAATTCTAGGAAGTGCCTCATTCGGGTCATCCTACAAAGCCGTAATTTTGGACGGCCAAGCAGTGGTTGTCAAGAGGTACAAGCAAATGAACAATGTGCAAAGAGAAGAGTTCCATGAACATATGAGAAGGCTAGGAAACCTCAACCATCCCAATGTTCTACCTCTCCTTTCTTATTATTATAGAAGAGAAGAAAAGCTTTTGATCTCTGCCTTTGTTCACAATGGTTGCTTGGCTAGTCATCTTCATGGTAACCACAACTACCAGAAGCCGGGACTTGATTGGGCAACCCGTTTGAAAATCGTGAAAGGTGTAGCGAGGGGTTTGTCATATCTATACAGTGCACTCCCAAGCGTGATTGTGCCTCATGGTCATCTAAAATCTTCCAATGTACTTTTGGATGAATCCTTTGAGCCTCTGCTAACTGATTATGCACTCAGTCCTTTGATCAATCTTGACCACGCACAACAAATCATCATGCCTTACAAATCCCCAGAGTATGCTCAACTTGGGCGCATTACAAAGAAAACTGACGTGTGGAGTTTTGGGATTCTAATATTGGAGATTCTGACGGGTAAATTCCCAGAGAACTATATTACACCAAGGCATAATAGTGATTCAGACTTAGCCAGTTGGGTAAATATGATGATTACCGAGAAGCGCACAAGCGATGTATTTGACGTAGAGATGGGAGGAGTAGGTACCAGTAAAGCTGAATTGCTCAAACTCTTAAAGATTGGACTTAGTTGTTGTGAGGAGAATGTGGAAAGAAGGTTGGACATCAAAGAGGCTTTGGAGCAGATTGAAGACTTGAATGAGGGTCAAACAAGTACTACTGATCATACTGTTGGAGAGTACTCTTCCTCCCTTTTCACCACCACTACTACTGAAAGGGATGCTTACAGAGCTGTGTGA 2037 0.4256 MGARSNSIVRAPAAFNNNNVKGLVVFLVLLLLSCPSMSMSSSDAEALLKFKGSLTNAVSLSSWEPSINPKPPCTGNISNWVGLFCLNDRVLGLRLESMGLTGNINIESLASMPMLRMVSLMNNTFVGPLPNIKMLPHLRSVYLSYNHFSGQIPDDAFTGMPRLRKVYLSNNEFTGKIPSSLAILPTLLVLRLDANKFQGEIPNFHHKNNLKIINFSNNDLEGPIPPNLRTFDASSFSGNALLCGPPLTNKCQLGNPKMLVMKTLLIVIMIAFIVAIVVSILIISRLRSQKKQLNEEHYSTTSKFHTQASSKYVKPPAVYVKTKSLAEHYDPRSPKPDQHSHSHSKKEKGEQGKLIFLKKDGLKFDLQDLLRASAEILGSASFGSSYKAVILDGQAVVVKRYKQMNNVQREEFHEHMRRLGNLNHPNVLPLLSYYYRREEKLLISAFVHNGCLASHLHGNHNYQKPGLDWATRLKIVKGVARGLSYLYSALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPLINLDHAQQIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYITPRHNSDSDLASWVNMMITEKRTSDVFDVEMGGVGTSKAELLKLLKIGLSCCEENVERRLDIKEALEQIEDLNEGQTSTTDHTVGEYSSSLFTTTTTERDAYRAV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04869 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 27 647 IPR046959 -
Trre12g04869 678 Pfam Leucine rich repeat 136 197 IPR001611 GO:0005515
Trre12g04869 678 Pfam Protein tyrosine and serine/threonine kinase 375 583 IPR001245 GO:0004672|GO:0006468
Trre12g04869 678 Gene3D Ribonuclease Inhibitor 131 253 IPR032675 -
Trre12g04869 678 Gene3D Phosphorylase Kinase; domain 1 337 446 - -
Trre12g04869 678 SUPERFAMILY L domain-like 70 246 - -
Trre12g04869 678 FunFam Pollen receptor-like kinase 1 447 656 - -
Trre12g04869 678 FunFam pollen receptor-like kinase 1 339 446 - -
Trre12g04869 678 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Trre12g04869 678 SUPERFAMILY Protein kinase-like (PK-like) 375 644 IPR011009 -
Trre12g04869 678 ProSiteProfiles Protein kinase domain profile. 371 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04869 678 Pfam Leucine rich repeat N-terminal domain 41 85 IPR013210 -
Trre12g04869 678 MobiDBLite consensus disorder prediction 328 349 - -
Trre12g04869 678 Gene3D Ribonuclease Inhibitor 35 128 IPR032675 -
Trre12g04869 678 Gene3D Transferase(Phosphotransferase) domain 1 447 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04869 Trre-Chr12 62131950 62134094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04869 19 674 Receptor kinase-like Gene Family AT5G35390 46.598 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre12g04869 PK_Tyr_Ser-Thr 1.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04869 - - aprc:113854862 934.095