Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04868 ATGCAATTAGCTTCAAACACTGATAAGGACGATGAATGTTCAGAATGCCAACCCATCTTGAATCACCAAGACTCCTCCTCCTTTTCCTGCGAAATTATTCCTGATGATAATGACGATGATATAGAGAATGTTCCTGTTCACGACTCTGACCCACAATGCCGAATATGCCTTGATCTTGGAGGACAAGACTTAATTGCCCCTTGCCATTGCAAAGGTACGCAAAAGTATGTCCACAGATCTTGTCTGGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCCATCTTCATATTACGAGCAAATGTCCCAAAAGATCGGTGGTGGTTGAGGTTGAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATCATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTTCTTATCTACAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTACGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTTGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCGAAACAAGAACTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 723 0.4122 MQLASNTDKDDECSECQPILNHQDSSSFSCEIIPDDNDDDIENVPVHDSDPQCRICLDLGGQDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAIFILRANVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04868 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 105 IPR013083 -
Trre12g04868 240 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 173 240 - -
Trre12g04868 240 Pfam RING-variant domain 53 100 IPR011016 GO:0008270
Trre12g04868 240 SMART ringv_2 52 101 IPR011016 GO:0008270
Trre12g04868 240 CDD RING_CH-C4HC3_MARCH 53 101 - -
Trre12g04868 240 SUPERFAMILY RING/U-box 49 104 - -
Trre12g04868 240 ProSiteProfiles Zinc finger RING-CH-type profile. 45 107 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04868 Trre-Chr12 62100621 62103936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04868 36 199 C3H Transcription Factor Family AT1G50440 70.732 6.47e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04868 - - gmx:100789593 434.106