Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04867 ATGACGACGACGGATACCACATCACGCGGTTCAACATCATCCTCCAATGGACTCCTCACCGTCACCATTGCCAGCAGCACTCACCCTCATGGCCCCTCTGCTAACGACGATGATGACGACCTTCTCGTTGATCCTGACGATCCTTTCAACATTACTCAAACCAAGAATGCTCCTCCCGAAACCCTCAAGCGTTGGCGACAAGCAGCATTTGTGCTCAATGCATCCAGACGTTTTAGATATACTCTCGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATCAGAGCTCATGCACAAGTCATCAGAGCAGCTTTGCTTTTCAGATTGGCCGGTGAACGCGAACTAGTAACAGGTACATCAGTGGCACCCACAACTCCAGGTGGTGACTATGAAGTTGGACTCGAACAACTTGTTTCCATGTCCAAGAATCAAAATATTTCTGCTTTACAACAATATGGAGGGGTTAAAGGCTTATCAGATTTTCTAAAATCAGATCTCGATAAAGGGATTAGTGGAGATGACGTTGATCTATCAAGGAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAGGGTAGAAGTTTATGGAGGTTTCTATGGGAAGCTTGGCAAGATCTGACCCTTATAATATTGATTATAGCAGCTGCAGTATCATTAGTGCTTGGAATAAAAACAGAGGGTTTGGAAGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTTTACTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTTCAGTTTCAGAACTTGAATGCAGAAAAACAAAATATACAATTGGAGGCTATAAGAGGTGGTAGAACAATAAAAATATCGATATTTGAAATTGTTGTTGGTGATGTACTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGACGGAGTTTTAATTACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAGGATCAAAAAGCACCATTTTTAATGTCAGGTTGCAAAGTAGCAGATGGAGTTGGTTCTATGCTGGTAACTAGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAACTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTACGATTGAATGGAGTAGCAACTTTTATTGGTATCGTTGGGCTTACTGTAGCTGCAGCTGTTCTTGTAGTCCTCTTGGGAAGATACTTTTCTGGCAATACGAAAGACTTAGATGGAAAAGTTCAATTTGTTGCTGGAGAGACTAGTATCAGCGATGCTGTAGATGCGAGCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCAGAAGGTCTACCTTTAGCAGTTACCTTAACCCTAGCATACTCGATGCGGAAGATGATGGCAGACAAAGCCTTGGTACGAAGGTTGTCAGCTTGCGAAACCATGGGCTCTGCTACGACAATTTGCAGCGATAAAACTGGAACTTTGACCTTAAACCAGATGACTGTAGTTGAGGCATATGTTGGGAGGAAGAAATTAAATCCACCAGATGACTCGTCAAAATTGCATTCAGAAGTTTTATCTCTCATAAATGAAGGCATAGCGCAAAATACAACAGGCAATATTTTTGTTCCTAAGGATGGTGGAGAGGCAGAGGTTTCAGGATCTCCTACAGAGAAGGCAATTCTATCATGGGCTTTGAAGTTGGGAATGAAATTTGAACTTGTCAGATCAAGTACAAAGATTATCCATGTCTTCCCCTTTAATTCTGAGAAAAAGCGAGGTGGTGTTGCTGTGAAACTGGCGGACTCTGGAGTGCATATACATTGGAAAGGAGCTGCTGAGATAGTTCTAGGAACGTGTACCCAATATCTTGATTCAGATGGTCACCGGCAATCTATTGAAGAAGAGAAGGCATTCTTCAAGAAGGCAATTGATGACATGGCTGCTCAGAGCTTGCGTTGTGTTGCTATTGCATACAGATCATATGAATTGGACAAAATTCCATCTAAGGAGGAGGATTTAGACCAGTGGACCTTACCTGAACACGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAAGAAGCTGTGAGATTATGTACTGAGGCTGGTGTTAAGGTACGCATGGTTACTGGGGACAATCCTCAAACAGCAAAAGCAATAGCTTTGGAGTGCGGAATACTAGTTTCAACTGAAGATGCAGTTGAGCCAAATGTAATTGAAGGAAAGACATTCCGTCAATTCTCTGAAAAGGAAAGGGAACAAGTTGCTAAGAAAATAACTGTGATGGGAAGATCATCTCCAAATGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTTGTTGCTGTCACAGGAGATGGAACTAATGATGCCCCTGCTCTTCATGAGGCAGATATTGGTCTTTCTATGGGTATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGTCGTTCTGTTTATGCAAATATTCAGAAATTTATTCAGTTCCAACTCACTGTAAATGTTGCTGCTCTTGTTATAAATGTTGTGGCAGCGGTATCTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTCTGTGGGTTAACCTTATTATGGACACACTTGGGGCTCTTGCTCTGGCTACCGAGCCACCGACTGACAGCCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACGAATATCATGTGGAGGAACTTGTTCGTACAGGCTCTTTATCAAGTGATTGTTCTTCTGGTTCTTAACTTTGGTGGTGAAAGTATACTACGTCAAGATTCTAGGACTCATACCTTACAAGTGAAGAATACTTTAATTTTCAACGCATTCGTCTTGTGCCAAATATTCAATGAATTCAATGCTCGAAAGCCAGAAGGAATGAATGTCTTCAAGGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTCGGAATGACCTTTATACTCCAGATAATCATCATCGAGTTCCTTGGGAAGTTCACGACGACAGTGAGGCTTAATTCGATGCAGTGGCTTGCTTGTCTTTGTATTGGGCTGTTCAGCTGGCCACTTGCAATACTTGGAAAATTAATTCCAGTTCCCAAAACACCATTGTCACGATGCGTCCTGAAGGTGTTTAGGCGCTTGAAGAAATCGCGGACTGCATAA 3270 0.4217 MTTTDTTSRGSTSSSNGLLTVTIASSTHPHGPSANDDDDDLLVDPDDPFNITQTKNAPPETLKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERELVTGTSVAPTTPGGDYEVGLEQLVSMSKNQNISALQQYGGVKGLSDFLKSDLDKGISGDDVDLSRRKNAFGTNTYPRKKGRSLWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEAIRGGRTIKISIFEIVVGDVLPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDQKAPFLMSGCKVADGVGSMLVTSVGINTEWGLLMATISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLVVLLGRYFSGNTKDLDGKVQFVAGETSISDAVDASIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLNPPDDSSKLHSEVLSLINEGIAQNTTGNIFVPKDGGEAEVSGSPTEKAILSWALKLGMKFELVRSSTKIIHVFPFNSEKKRGGVAVKLADSGVHIHWKGAAEIVLGTCTQYLDSDGHRQSIEEEKAFFKKAIDDMAAQSLRCVAIAYRSYELDKIPSKEEDLDQWTLPEHELVLLAIVGIKDPCRPGVKEAVRLCTEAGVKVRMVTGDNPQTAKAIALECGILVSTEDAVEPNVIEGKTFRQFSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLITNIMWRNLFVQALYQVIVLLVLNFGGESILRQDSRTHTLQVKNTLIFNAFVLCQIFNEFNARKPEGMNVFKGVTKNRLFMGIVGMTFILQIIIIEFLGKFTTTVRLNSMQWLACLCIGLFSWPLAILGKLIPVPKTPLSRCVLKVFRRLKKSRTA 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04867 1089 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 505 702 IPR023299 GO:0000166
Trre12g04867 1089 SUPERFAMILY HAD-like 496 910 IPR036412 -
Trre12g04867 1089 Pfam haloacid dehalogenase-like hydrolase 495 819 - -
Trre12g04867 1089 SMART Cation_ATPase_N_a_2 154 228 IPR004014 -
Trre12g04867 1089 Pfam E1-E2 ATPase 276 476 - -
Trre12g04867 1089 CDD P-type_ATPase_Ca_PMCA-like 180 938 - -
Trre12g04867 1089 FunFam Calcium-transporting ATPase 822 1069 - -
Trre12g04867 1089 SUPERFAMILY Calcium ATPase, transduction domain A 277 371 IPR008250 -
Trre12g04867 1089 FunFam Calcium-transporting ATPase 698 850 - -
Trre12g04867 1089 FunFam Calcium-transporting ATPase 9 plasma membrane-type 352 522 - -
Trre12g04867 1089 FunFam Calcium-transporting ATPase 508 705 - -
Trre12g04867 1089 PRINTS Sodium/potassium-transporting ATPase signature 491 512 - -
Trre12g04867 1089 PRINTS Sodium/potassium-transporting ATPase signature 617 635 - -
Trre12g04867 1089 PRINTS Sodium/potassium-transporting ATPase signature 241 261 - -
Trre12g04867 1089 MobiDBLite consensus disorder prediction 1 58 - -
Trre12g04867 1089 SFLD Haloacid Dehalogenase 480 857 - -
Trre12g04867 1089 PRINTS P-type cation-transporting ATPase superfamily signature 829 841 - -
Trre12g04867 1089 PRINTS P-type cation-transporting ATPase superfamily signature 498 512 - -
Trre12g04867 1089 PRINTS P-type cation-transporting ATPase superfamily signature 805 824 - -
Trre12g04867 1089 PRINTS P-type cation-transporting ATPase superfamily signature 322 336 - -
Trre12g04867 1089 PRINTS P-type cation-transporting ATPase superfamily signature 698 709 - -
Trre12g04867 1089 PRINTS P-type cation-transporting ATPase superfamily signature 720 730 - -
Trre12g04867 1089 FunFam Calcium-transporting ATPase 206 263 - -
Trre12g04867 1089 FunFam Calcium-transporting ATPase 57 113 - -
Trre12g04867 1089 Gene3D - 59 111 - -
Trre12g04867 1089 PANTHER CATION TRANSPORTING ATPASE 98 1067 - -
Trre12g04867 1089 Gene3D - 179 374 - -
Trre12g04867 1089 Pfam Cation transporter/ATPase, N-terminus 156 223 IPR004014 -
Trre12g04867 1089 ProSitePatterns E1-E2 ATPases phosphorylation site. 500 506 IPR018303 -
Trre12g04867 1089 Gene3D - 206 1054 - -
Trre12g04867 1089 Gene3D - 495 850 IPR023214 -
Trre12g04867 1089 Gene3D - 508 705 IPR023299 GO:0000166
Trre12g04867 1089 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 1067 IPR023298 -
Trre12g04867 1089 MobiDBLite consensus disorder prediction 1 31 - -
Trre12g04867 1089 NCBIfam calcium-translocating P-type ATPase, PMCA-type 144 1067 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre12g04867 1089 FunFam Calcium-transporting ATPase 254 374 - -
Trre12g04867 1089 SFLD p-type atpase 480 857 IPR044492 -
Trre12g04867 1089 Pfam Cation transporting ATPase, C-terminus 890 1065 IPR006068 -
Trre12g04867 1089 NCBIfam HAD-IC family P-type ATPase 440 528 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre12g04867 1089 NCBIfam HAD-IC family P-type ATPase 771 885 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre12g04867 1089 Pfam Ca2+-ATPase N terminal autoinhibitory domain 46 89 IPR024750 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04867 Trre-Chr12 62073223 62086994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04867 11 1089 Primary Pumps ATPases AT3G21180 76.173 0.0 1656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04867 K01537 - gmx:100817367 1798.48