Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04866 ATGACAAACAACAACAACAACAAGAACATGACGACGACGGATACCACATCACGCGGTTCAACATCATCCTCCAATGGACTCCTCACCGTCACCATTGCCAGCAGCACTCACCCTCATGGCCCCTCTGCTAACGACGATGATGACGACCTTCTCGTTGATCCTGACGATCCTTTCAACATTACTCAAACCAAGAATGCTCCTCCCGAAACCCTCAAGCGTTGGCGACAAGCAGCATTTGTGCTCAATGCATCCAGACGTTTTAGATATACTCTCGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATCAGAGCTCATGCACAAGTCATCAGAGCAGCTTTGCTTTTCAGATTGGCCGGTGAACGCGAACTAGTAACAGGTACATCAGTGGCACCCACAACTCCAGGTGGTGACTATGAAGTTGGACTCGAACAACTTGTTTCCATGTCCAAGAATCAAAATATTTCTGCTTTACAACAATATGGAGGGGTTAAAGGCTTATCAGATTTTCTAAAATCAGATCTCGATAAAGGGATTAGTGGAGATGACGTTGATCTATCAAGGAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAGGGTAGAAGTTTATGGAGGTTTCTATGGGAAGCTTGGCAAGATCTGACCCTTATAATATTGATTATAGCAGCTGCAGTATCATTAGTGCTTGGAATAAAAACAGAGGGTTTGGAAGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTTTACTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTTCAGTTTCAGAACTTGAATGCAGAAAAACAAAATATACAATTGGAGGCTATAAGAGGTGGTAGAACAATAAAAATATCGATATTTGAAATTGTTGTTGGTGATGTACTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGACGGAGTTTTAATTACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAGGATCAAAAAGCACCATTTTTAATGTCAGGTTGCAAAGTAGCAGATGGAGTTGGTTCTATGCTGGTAACTAGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAACTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTACGATTGAATGGAGTAGCAACTTTTATTGGTATCGTTGGGCTTACTGTAGCTGCAGCTGTTCTTGTAGTCCTCTTGGGAAGATACTTTTCTGGCAATACGAAAGACTTAGATGGAAAAGTTCAATTTGTTGCTGGAGAGACTAGTATCAGCGATGCTGTAGATGCGAGCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCAGAAGGTCTACCTTTAGCAGTTACCTTAACCCTAGCATACTCGATGCGGAAGATGATGGCAGACAAAGCCTTGGTACGAAGGTTGTCAGCTTGCGAAACCATGGGCTCTGCTACGACAATTTGCAGCGATAAAACTGGAACTTTGACCTTAAACCAGATGACTGTAGTTGAGGCATATGTTGGGAGGAAGAAATTAAATCCACCAGATGACTCGTCAAAATTGCATTCAGAAGTTTTATCTCTCATAAATGAAGGCATAGCGCAAAATACAACAGGCAATATTTTTGTTCCTAAGGATGGTGGAGAGGCAGAGGTTTCAGGATCTCCTACAGAGAAGGCAATTCTATCATGGGCTTTGAAGTTGGGAATGAAATTTGAACTTGTCAGATCAAGTACAAAGATTATCCATGTCTTCCCCTTTAATTCTGAGAAAAAGCGAGGTGGTGTTGCTGTGAAACTGGCGGACTCTGGAGTGCATATACATTGGAAAGGAGCTGCTGAGATAGTTCTAGGAACGTGTACCCAATATCTTGATTCAGATGGTCACCGGCAATCTATTGAAGAAGAGAAGGCATTCTTCAAGAAGGCAATTGATGACATGGCTGCTCAGAGCTTGCGTTGTGTTGCTATTGCATACAGATCATATGAATTGGACAAAATTCCATCTAAGGAGGAGGATTTAGACCAGTGGACCTTACCTGAACACGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAAGAAGCTGTGAGATTATGTACTGAGGCTGGTGTTAAGGTACGCATGGTTACTGGGGACAATCCTCAAACAGCAAAAGCAATAGCTTTGGAGTGCGGAATACTAGTTTCAACTGAAGATGCAGTTGAGCCAAATGTAATTGAAGGAAAGACATTCCGTCAATTCTCTGAAAAGGAAAGGGAACAAGTTGCTAAGAAAATAACTGTGATGGGAAGATCATCTCCAAATGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTTGTTGCTGTCACAGGAGATGGAACTAATGATGCCCCTGCTCTTCATGAGGCAGATATTGGTCTTTCTATGGGTATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGTCGTTCTGTTTATGCAAATATTCAGAAATTTATTCAGTTCCAACTCACTGTAAATGTTGCTGCTCTTGTTATAAATGTTGTGGCAGCGGTATCTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTCTGTGGGTTAACCTTATTATGGACACACTTGGGGCTCTTGCTCTGGCTACCGAGCCACCGACTGACAGCCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACGAATATCATGTGGAGGAACTTGTTCGTACAGGCTCTTTATCAAGTGATTGTTCTTCTGGTTCTTAACTTTGGTGGTGAAAGTATACTACGTCAAGATTCTAGGACTCATACCTTACAAGTGAAGAATACTTTAATTTTCAACGCATTCGTCTTGTGCCAAATATTCAATGAATTCAATGCTCGAAAGCCAGAAGGAATGAATGTCTTCAAGGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTCGGAATGACCTTTATACTCCAGATAATCATCATCGAGTTCCTTGGGAAGTTCACGACGACAGTGAGGCTTAATTCGATGCAGTGGCTTGCTTGTCTTTGTATTGGGCTGTTCAGCTGGCCACTTGCAATACTTGGAAAATTAATTCCAGTTCCCAAAACACCATTGTCACGATGCGTCCTGAAGGTGTTTAGGCGCTTGAAGAAATCGCGGACTGCATAA 3297 0.421 MTNNNNNKNMTTTDTTSRGSTSSSNGLLTVTIASSTHPHGPSANDDDDDLLVDPDDPFNITQTKNAPPETLKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERELVTGTSVAPTTPGGDYEVGLEQLVSMSKNQNISALQQYGGVKGLSDFLKSDLDKGISGDDVDLSRRKNAFGTNTYPRKKGRSLWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEAIRGGRTIKISIFEIVVGDVLPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDQKAPFLMSGCKVADGVGSMLVTSVGINTEWGLLMATISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLVVLLGRYFSGNTKDLDGKVQFVAGETSISDAVDASIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLNPPDDSSKLHSEVLSLINEGIAQNTTGNIFVPKDGGEAEVSGSPTEKAILSWALKLGMKFELVRSSTKIIHVFPFNSEKKRGGVAVKLADSGVHIHWKGAAEIVLGTCTQYLDSDGHRQSIEEEKAFFKKAIDDMAAQSLRCVAIAYRSYELDKIPSKEEDLDQWTLPEHELVLLAIVGIKDPCRPGVKEAVRLCTEAGVKVRMVTGDNPQTAKAIALECGILVSTEDAVEPNVIEGKTFRQFSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLITNIMWRNLFVQALYQVIVLLVLNFGGESILRQDSRTHTLQVKNTLIFNAFVLCQIFNEFNARKPEGMNVFKGVTKNRLFMGIVGMTFILQIIIIEFLGKFTTTVRLNSMQWLACLCIGLFSWPLAILGKLIPVPKTPLSRCVLKVFRRLKKSRTA 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04866 1098 MobiDBLite consensus disorder prediction 1 69 - -
Trre12g04866 1098 SFLD C1.7: P-type atpase like 489 866 - -
Trre12g04866 1098 Pfam haloacid dehalogenase-like hydrolase 504 828 - -
Trre12g04866 1098 FunFam Calcium-transporting ATPase 215 272 - -
Trre12g04866 1098 Pfam E1-E2 ATPase 285 485 - -
Trre12g04866 1098 SMART Cation_ATPase_N_a_2 163 237 IPR004014 -
Trre12g04866 1098 ProSitePatterns E1-E2 ATPases phosphorylation site. 509 515 IPR018303 -
Trre12g04866 1098 SUPERFAMILY Calcium ATPase, transduction domain A 286 380 IPR008250 -
Trre12g04866 1098 FunFam Calcium-transporting ATPase 9 plasma membrane-type 361 531 - -
Trre12g04866 1098 SUPERFAMILY HAD-like 505 919 IPR036412 -
Trre12g04866 1098 FunFam Calcium-transporting ATPase 263 383 - -
Trre12g04866 1098 Gene3D - 68 120 - -
Trre12g04866 1098 FunFam Calcium-transporting ATPase 517 714 - -
Trre12g04866 1098 CDD P-type_ATPase_Ca_PMCA-like 189 947 - -
Trre12g04866 1098 Gene3D - 188 383 - -
Trre12g04866 1098 FunFam Calcium-transporting ATPase 707 859 - -
Trre12g04866 1098 Pfam Ca2+-ATPase N terminal autoinhibitory domain 55 98 IPR024750 GO:0005516
Trre12g04866 1098 SUPERFAMILY Calcium ATPase, transmembrane domain M 164 1076 IPR023298 -
Trre12g04866 1098 PANTHER CATION TRANSPORTING ATPASE 107 1076 - -
Trre12g04866 1098 NCBIfam HAD-IC family P-type ATPase 449 537 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre12g04866 1098 NCBIfam HAD-IC family P-type ATPase 780 894 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre12g04866 1098 Pfam Cation transporter/ATPase, N-terminus 165 232 IPR004014 -
Trre12g04866 1098 FunFam Calcium-transporting ATPase 66 122 - -
Trre12g04866 1098 FunFam Calcium-transporting ATPase 831 1078 - -
Trre12g04866 1098 Gene3D - 215 1063 - -
Trre12g04866 1098 PRINTS P-type cation-transporting ATPase superfamily signature 707 718 - -
Trre12g04866 1098 PRINTS P-type cation-transporting ATPase superfamily signature 729 739 - -
Trre12g04866 1098 PRINTS P-type cation-transporting ATPase superfamily signature 507 521 - -
Trre12g04866 1098 PRINTS P-type cation-transporting ATPase superfamily signature 814 833 - -
Trre12g04866 1098 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Trre12g04866 1098 PRINTS P-type cation-transporting ATPase superfamily signature 838 850 - -
Trre12g04866 1098 PRINTS Sodium/potassium-transporting ATPase signature 250 270 - -
Trre12g04866 1098 PRINTS Sodium/potassium-transporting ATPase signature 500 521 - -
Trre12g04866 1098 PRINTS Sodium/potassium-transporting ATPase signature 626 644 - -
Trre12g04866 1098 NCBIfam calcium-translocating P-type ATPase, PMCA-type 153 1076 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre12g04866 1098 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 514 711 IPR023299 GO:0000166
Trre12g04866 1098 Pfam Cation transporting ATPase, C-terminus 899 1074 IPR006068 -
Trre12g04866 1098 Gene3D - 517 714 IPR023299 GO:0000166
Trre12g04866 1098 SFLD p-type atpase 489 866 IPR044492 -
Trre12g04866 1098 Gene3D - 504 859 IPR023214 -
Trre12g04866 1098 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04866 Trre-Chr12 62073223 62087021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04866 20 1098 Primary Pumps ATPases AT3G21180 76.173 0.0 1656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04866 K01537 - gmx:100817367 1798.48