Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04865 ATGTCTCACTGGACATCTGTTCCTCCTCAAATAAACTCCACATGGATTCCATCTCACTCCACACCATGTTCCTGGGTGGGTGTCCAATGCGACCACACTAATAATTCCCACCGTGTCATCTCTCTCAATCTTTCCTATTATGACATTCCTGGTCAACTGGGACCTGAGATTGCTAATTGCACACAACTTCAACACTTAGACCTTACTTATAACTACTTTACCGGCCAAATACCTCACTCATTCACTAACCTTCACAAACTCACCTATCTTAGTCTTTCTACTAATCTTTTCACTTCTCCATTTCCTCATTTTTTAACTCAGATCCCTCACCTCCACCTTCTTGATCTCTCTTATAACCAATTTACCGGTTCCATTCCAACTAGTATTTCCAACATGACTCAACTTCGCAACCTGTATCTCCAAAATAACACCTTGTCTGGTCCAATACCTTCATCCATTGGGAACTGCACTCAACTGCAAGACTTGTTTTTGAACTCTAATCAGCTGCAGGGTGTCATTCCTTATACTATAAACAATCTCAATAATCTTGTTCGTTTTGATGTTGCCTACAATAAACTAACAGGTACCATTCCATTTGGTGGTGCCTCTTCCTCTGGTTGTCAAAATTTACTGTTTTTGGATATCTCATACAACAACTTCTTCAGTGGAGGAGGCATTCCCTCAGCCATTGGGAATTGTACTTCTTTATCACAATTTGTTGCTGTCAGATGTAACTTGGTTGGAACTATTCCATCCTCTATTGGTCTGCTCACCAAGCTTTCCCTTCTAAGCCTTCCTGAGAACCATTTAACCGGAAAAATACCTCCCCAAATAGGTAACTGTAAGTCTTTGAATCAGTTGCATTTGTATTCCAATCGACTTGATGGAAACATACCGACTGAATTGGGAAAGCTGACTGAACTGCAGGACCTTGAGCTGTTTTCTAATCAATTGAGTGGTGAGATTCCACTTGGCATATGGAAGATTCCAAGTCTTGAACATCTACTTGTGTATAATAATACCCTTTCTGGAGAACTTCCTGTGGAGATGACAGAGCTCAAGAACCTCAAAAACATCTCCTTGTTTAACAACATGTTCTCTGGAGTCATACCTCAAAGCTTGGGAATTAATAGCACTTTGTTGCAGTTGGACTTTATAAACAACAGGTTCACCGGCAACCTCCCACCAAATCTTTGTTTTCGCAGAAAGTTAAGCATTTTGAATATGGGCATCAATCAACTTCAAGGTACCATACCTCGTGATGTCGGAAGATGCCCAACTCTAAGAAGGGTCATTCTTAAACAAAACAGCTTTACTGGGCCTCTTCCTGATTTTGAAACTAATACCAATCTCTTATACATGGATATCAGCAACAACAAAATCAACGGATCGATTCCATCAAGTTTAGGAAACTGCACAAATCTCACAGACCTAATTTTGCCTATGAACAAATTTAGCGGGCCAATACCATCAGAGATAGGAAACCTTGTGAACCTTAGGACTTTGGTTCTTGCTCACAACAACTTAGAAGGTCCATTGCCATTTCAGCTGTCAAACTGTACCAAAATGGACAAGTTTGACGTGGGATTTAATTTCTTAAATGGTTCCTTGCCATCAAGTTTGCAGAGATGGACAAGGCTAAACACACTCATTTTGAGTGAGAATCGTTTTAGTGGCGGCATTCCAGCTTTCTTGTCGGCATTTAACGATCTTTCTGAACTACAGCTTGGTGGCAATATGTTTGGAGGGAGGATTCCTAGATCGGTTGGGGCATTGCAGAATTTGATCTACGGGTTAAATCTTAGTTCTAATGGGCTGATAGGAGACATACCTGTGGAAATTGGAAAACTGAAAACTTTGCAAATGCTGGATCTGTCTCAGAACAATTTGACAGGAAGCATACAAGTTCTTGATGAACTCCCTTCATTGGTTCAAATCAATATTTCATATAATTATTTTCAGGGTCTCATACCAAAGAGTCTAATGAAGCTGCTTAATTCTCCCTTCTCATCATTTTTGGGGAATCCTGGGCTATGTATCAGTTGTTCACCATCTGATGGTTTGGTTTGCCCCAAAAGCAGCCATCTAAAACCATGTGATAACAAAACAGTGAAACACAAAGGCCTCGGCAAAACTGCAATTGTAATGATAGCTTTAGGATCCTCAATATTTGTTGTTTTTCTGTTGATGGGATTAGTATATATCTTTGTTTATCGCAGAAAATCTAAGCAGCAAGTTCATATATCTGATAATGGTGGTCCTTCGTCCCTTTTTAACAAAGTCCTGAAGGCTACATCGAACCTCAGTGATCAGTATATTATTGGAAGGGGAGCCCATGGAATTGTTTACAAAGCCCTTGTAAGTCAAGACAAAGCTTTTGCTGTAAAGAAGCTAGCATTTGCTGCCAGCAAAGGTAAGAACATGAGCATGATCAGAGAAATTCAAACCCTTGGACAAGTTAGGCATCGGAATCTTGTCAAATTGGAAGAGTTCTGGTTCGGACAAGATTATGGTCTAATTCTGTACACATACATGCCAAATGGAAGCCTTTATGATGTATTGCATGAAAAGAAACCAGCACCATCCTTAGAGTGGAATGTCCGATATAAGATAGCTGTTGGAATTGCTCATGGGTTGTCTTATCTCCATTATGACTGTGATCCTCCCATAGTGCACCGAGATATCAAACCGAACAACATACTTTTAGACTCTGATATGGAGCCTCACATTGCTGACTTTGGTATTGCCAAACTTTTAGACCAGTCTTCTGCATCAAATCCTTCCTTATCTGTGCCGGGAACAATTGGTTATATTGCGCCAGAGAATGCTTATACAGCAACAAGTAGTAGGGAGTGTGACGTGTACAGTTATGGGGTAGTTTTGCTTGAGCTGATAACCAGAAAGAAGGTAGCAGATCCATTATTTATGGAGGGTACTGATATAGTGGGTTGGGTTAGATTGTTGTGGAGTGAAACAGGAGAAATTAACCAAATTGTTGATTCAAGCCTTGTAAATGAATGTCTAGATACCAATATAATGGAAAATGTTACCAAAGTGCTTATGCTGGCTTTGAGATGTACTGAAAAGGATCCACACAAGAGGCCCACAATGACAGATGTTACCAAGCAATTATCAGATTCTAATCCACAGAAAATAAGTATGAAGGCCTAG 3171 0.4011 MSHWTSVPPQINSTWIPSHSTPCSWVGVQCDHTNNSHRVISLNLSYYDIPGQLGPEIANCTQLQHLDLTYNYFTGQIPHSFTNLHKLTYLSLSTNLFTSPFPHFLTQIPHLHLLDLSYNQFTGSIPTSISNMTQLRNLYLQNNTLSGPIPSSIGNCTQLQDLFLNSNQLQGVIPYTINNLNNLVRFDVAYNKLTGTIPFGGASSSGCQNLLFLDISYNNFFSGGGIPSAIGNCTSLSQFVAVRCNLVGTIPSSIGLLTKLSLLSLPENHLTGKIPPQIGNCKSLNQLHLYSNRLDGNIPTELGKLTELQDLELFSNQLSGEIPLGIWKIPSLEHLLVYNNTLSGELPVEMTELKNLKNISLFNNMFSGVIPQSLGINSTLLQLDFINNRFTGNLPPNLCFRRKLSILNMGINQLQGTIPRDVGRCPTLRRVILKQNSFTGPLPDFETNTNLLYMDISNNKINGSIPSSLGNCTNLTDLILPMNKFSGPIPSEIGNLVNLRTLVLAHNNLEGPLPFQLSNCTKMDKFDVGFNFLNGSLPSSLQRWTRLNTLILSENRFSGGIPAFLSAFNDLSELQLGGNMFGGRIPRSVGALQNLIYGLNLSSNGLIGDIPVEIGKLKTLQMLDLSQNNLTGSIQVLDELPSLVQINISYNYFQGLIPKSLMKLLNSPFSSFLGNPGLCISCSPSDGLVCPKSSHLKPCDNKTVKHKGLGKTAIVMIALGSSIFVVFLLMGLVYIFVYRRKSKQQVHISDNGGPSSLFNKVLKATSNLSDQYIIGRGAHGIVYKALVSQDKAFAVKKLAFAASKGKNMSMIREIQTLGQVRHRNLVKLEEFWFGQDYGLILYTYMPNGSLYDVLHEKKPAPSLEWNVRYKIAVGIAHGLSYLHYDCDPPIVHRDIKPNNILLDSDMEPHIADFGIAKLLDQSSASNPSLSVPGTIGYIAPENAYTATSSRECDVYSYGVVLLELITRKKVADPLFMEGTDIVGWVRLLWSETGEINQIVDSSLVNECLDTNIMENVTKVLMLALRCTEKDPHKRPTMTDVTKQLSDSNPQKISMKA 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04865 1056 FunFam Leucine-rich receptor-like protein kinase family protein 106 199 - -
Trre12g04865 1056 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 403 1044 - -
Trre12g04865 1056 MobiDBLite consensus disorder prediction 1040 1056 - -
Trre12g04865 1056 Pfam Leucine rich repeat 599 652 IPR001611 GO:0005515
Trre12g04865 1056 Pfam Leucine rich repeat 59 96 IPR001611 GO:0005515
Trre12g04865 1056 Gene3D Phosphorylase Kinase; domain 1 738 844 - -
Trre12g04865 1056 SUPERFAMILY L domain-like 379 696 - -
Trre12g04865 1056 MobiDBLite consensus disorder prediction 1032 1056 - -
Trre12g04865 1056 ProSiteProfiles Protein kinase domain profile. 768 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04865 1056 FunFam Serine/threonine-protein kinase-like protein CCR4 845 1056 - -
Trre12g04865 1056 Pfam Protein kinase domain 772 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04865 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Trre12g04865 1056 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 562 686 - -
Trre12g04865 1056 SMART serkin_6 768 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04865 1056 SUPERFAMILY Protein kinase-like (PK-like) 751 1044 IPR011009 -
Trre12g04865 1056 FunFam Leucine-rich repeat family protein 207 443 - -
Trre12g04865 1056 FunFam Leucine-rich repeat receptor-like kinase 2 105 - -
Trre12g04865 1056 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 444 541 - -
Trre12g04865 1056 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 735 844 - -
Trre12g04865 1056 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Trre12g04865 1056 Gene3D Ribonuclease Inhibitor 148 204 IPR032675 -
Trre12g04865 1056 ProSiteProfiles Leucine-rich repeat profile. 619 641 IPR001611 GO:0005515
Trre12g04865 1056 Gene3D Ribonuclease Inhibitor 205 444 IPR032675 -
Trre12g04865 1056 SUPERFAMILY RNI-like 36 372 - -
Trre12g04865 1056 Gene3D Transferase(Phosphotransferase) domain 1 845 1055 - -
Trre12g04865 1056 Gene3D Ribonuclease Inhibitor 2 147 IPR032675 -
Trre12g04865 1056 Gene3D Ribonuclease Inhibitor 563 686 IPR032675 -
Trre12g04865 1056 Gene3D Ribonuclease Inhibitor 445 562 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04865 Trre-Chr12 62069073 62072329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04865 7 1046 Receptor kinase-like Gene Family AT1G73080 51.070 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre12g04865 Pkinase 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04865 - - gmx:100778035 1536.93