Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04864 ATGAATTTATCAACTGGAAAAGCTTACACAGAGTTGCAGATGGGTTCTGTATCTGCAGATGACAAGATGGACACTGATTTCGATGAGGAGACACCTTTCAGTTTTACTTCACCTTCATCATCTTCTTCTTCTGCTCCTCCATCTAAACAACAACCACACACTTTTCATTTCGATTCTTCTGCAGTTACTTTGCCCAAATCATCTTCTTCTTCTTCTTCTTTCTTCAATCATCCTCGGACAAGACGAATCAGTAGGAGTATATATATTGTCTTAATCAAAGCTAAGGTCAACATCTTGCTACCATTTGGTCCTTTGGCCATCTTCCTACATTATTTCACCGGAAAACATGTTTGGGTTTTCTTCTTCGCCTTATTGGGTATTGCTCCTTTGGCTGAACGCCTTGGTTATGCTACCGAACAGCTTGCGTTTTACACCGGACCAACAGTTGGGGGTTTGCTTAATGCCACGTTTGGAAATGCAACTGAAATGATTATATCTATTTACGCATTGAAAAGCGATATGATTAGAGTCGTTCAGCAATCTTTACTTGGTTCAATCTTGTCAAATATGCTTCTAGTTCTTGGTTGTGCATTCTTTACTGGTGGGATTGTCCACTACAAAAAAGTTCAGGTTTTCAATAAGGCAGCTGCTGTTGTTAATTCAGGGTTGCTGTTGATGGCTGTAATGGGAATACTATTTCCTGCTGTGCTTCACTTTACTCACTCAGAGGTTCATCGTGGGAAGTCCGAATTATCTCTATCAAGATTTAGCAGCTGCATAATGCTAGTGGCCTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAACAAAATTTTTATAGTGCAGTTGATGAGGAAGTAGATACTTGTGAAAACTCTGACGAGGAGGAAGAACTTGAGTTAACTAAATGGGAAGCGATAATCTGGCTTGCTATTTTGACAGTATGGGTATCGGTATTGTCTGGATACCTTGTGGATGCCATAGAGGGAGCATCTGAATCATTGAATATGTCAGTGGCTTTTATTAGTGTCATCTTGCTTCCAATAGTAGGAAACGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCGTAAAGGACAAGCTAGATATCACAATTGGAGTTGCTGTTGGATCATCAACCCAAATATCGATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGATATGGATTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGGACGTCAAACTATTTTAAAGGCTTGATGCTTATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACATGTAGACCCTAAAAGTGGTGATGACTAA 1380 0.4 MNLSTGKAYTELQMGSVSADDKMDTDFDEETPFSFTSPSSSSSSAPPSKQQPHTFHFDSSAVTLPKSSSSSSSFFNHPRTRRISRSIYIVLIKAKVNILLPFGPLAIFLHYFTGKHVWVFFFALLGIAPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHRGKSELSLSRFSSCIMLVAYASYLFFQLRSQQNFYSAVDEEVDTCENSDEEEELELTKWEAIIWLAILTVWVSVLSGYLVDAIEGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKDMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04864 459 MobiDBLite consensus disorder prediction 30 53 - -
Trre12g04864 459 NCBIfam calcium/proton exchanger 99 449 IPR004798 GO:0006816|GO:0015369
Trre12g04864 459 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 51 454 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre12g04864 459 Pfam Sodium/calcium exchanger protein 307 446 IPR004837 GO:0016020|GO:0055085
Trre12g04864 459 Pfam Sodium/calcium exchanger protein 116 273 IPR004837 GO:0016020|GO:0055085
Trre12g04864 459 NCBIfam calcium/proton exchanger 90 449 - -
Trre12g04864 459 MobiDBLite consensus disorder prediction 15 53 - -
Trre12g04864 459 FunFam Vacuolar cation/proton exchanger 294 450 - -
Trre12g04864 459 Gene3D - 293 450 IPR044880 -
Trre12g04864 459 Gene3D - 147 287 IPR044880 -
Trre12g04864 459 FunFam Vacuolar cation/proton exchanger 147 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04864 Trre-Chr12 62044405 62051651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04864 58 454 Antiporters AT3G13320 72.319 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04864 K07300 - gmx:100806000 677.167