Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04863 ATGGCAGCATCAGAACAACAAGAAGAAATAATATTCAGGTCTAAACTTCCAGACATATACATCCCAAAACACCTTCCCCTCCATTCTTATTGCTTTGAAAATCTGTCCCAATTTGGTTCACGTCCATGTCTCATCAATGCACCCACCGGAAAGGTCTACACCTACCATGACGTTGAACTCACCTCTCGTAAAGTTGCCTCCGGTCTCAACAAATTGGGAGTCCAACAGGGTGATGTGATCATGATCCTCCTCCCCAATTCCCCTGAATTCGTCTTCTCCTTTCTGGCAGCTTCTTATCTCGGCGCCATAGCCACAGCAGCCAATCCTTTCTTCATGGCCGCGGAGATTGGAAAGCAAGCAAAAGCCTCCAACGCCAAGTTGATCATAACACAGGCATGTTACTACGACAAAGTCAAGGAGTTGTTGTTGGACAACCACAACAACAACAACAAGAAGAAGAAGTTGGTGCTCATAGACTCTCTCCCTCCCTCTACCACCACCACCACCACCACAGAAGATGAAGAAGAAGAAGATGATGATGATCATGTTCATTTCTCGACACTGATCGATGCTGATGAGAAGGAATTGCCGGCGGATGTGAAGATCGACCCTGACGATGTGGTGGCGCTTCCTTATTCATCAGGGACAACCGGTCTGCCAAAAGGGGTGATGTTAACACACAAGGGATTGGTGAGCAGCATAGCGCAGCAGGTGGATGGAGAGAATCCAAATCTATATTATAGCAGTGAAGATGTGATACTGTGTGTGCTTCCTCTGTTTCACATATACTCTCTAAACTCAGTTTTGCTATGTGGACTGAGAGCCAAGGCAAGTATACTTTTGATGCCAAAATTCGACATAAATGGTTTCTTGAGTCTTGTGAACAAACATGGAGTTACAGTTGCACCGGTGGTTCCTCCGATAGTGTTGGCGATTGCAAAGTCGCCGGATCTTAACAAATATGATCTGTCTTCAATAAGGATATTGAAATCAGGAGGTGCTCCACTCGGCAAAGAACTTGAAGACACTGTTAGGAACAAATTTCCCAAAGCAATACTTGGACAGGGATACGGAATGACTGAGGCAGGGCCAGTGTTAACAATGAGCTTAGCATTTGCCAAAGAAGCAGTGAATGTGAAACCAGGTGCGTGTGGAACAGTTGTAAGAAATGCAGAGATGAAGATTGTGGATCCTGAAACTGGTAATTCTTTACCTAGAAACCAATCTGGTGAAATCTGCATAAGAGGAGACCAGATCATGAAAGGTTATCTAAATGATGTGGAGGCAACTCAGAGAACGATTGACAAACAAGGCTGGTTGCATACAGGTGATATTGGGTATATTGACGATGACGATGAGTTATTCATTGTTGATAGATTGAAGGAATTGATCAAATACAAAGGATTTCAAGTTGCTCCAGCTGAACTTGAAGCTCTTCTTCTTTCTCATCCCAAAATTTCTGATGCTGCTGTTGTCCCAATGAAGGATGAAGCGGCCGGAGAGGTACCTGTTGCATTTGTTGTGAGATCAAATGGTCACACTGACTTAACCGAGGATGAAATTAAGCACTTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAGTCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCTTCAGGAAAAATCTTGCGTAAGGATCTCAGAGCAAAGTTAGCAGCAGAAGCTGTTCCAAATTGA 1707 0.4376 MAASEQQEEIIFRSKLPDIYIPKHLPLHSYCFENLSQFGSRPCLINAPTGKVYTYHDVELTSRKVASGLNKLGVQQGDVIMILLPNSPEFVFSFLAASYLGAIATAANPFFMAAEIGKQAKASNAKLIITQACYYDKVKELLLDNHNNNNKKKKLVLIDSLPPSTTTTTTTEDEEEEDDDDHVHFSTLIDADEKELPADVKIDPDDVVALPYSSGTTGLPKGVMLTHKGLVSSIAQQVDGENPNLYYSSEDVILCVLPLFHIYSLNSVLLCGLRAKASILLMPKFDINGFLSLVNKHGVTVAPVVPPIVLAIAKSPDLNKYDLSSIRILKSGGAPLGKELEDTVRNKFPKAILGQGYGMTEAGPVLTMSLAFAKEAVNVKPGACGTVVRNAEMKIVDPETGNSLPRNQSGEICIRGDQIMKGYLNDVEATQRTIDKQGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPKISDAAVVPMKDEAAGEVPVAFVVRSNGHTDLTEDEIKHFISKQVVFYKRISRVFFIDAIPKSPSGKILRKDLRAKLAAEAVPN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04863 568 CDD 4CL 21 557 - -
Trre12g04863 568 FunFam 4-coumarate--CoA ligase 2 462 564 - -
Trre12g04863 568 SUPERFAMILY Acetyl-CoA synthetase-like 11 564 - -
Trre12g04863 568 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 559 - -
Trre12g04863 568 ProSitePatterns Putative AMP-binding domain signature. 210 221 IPR020845 -
Trre12g04863 568 Pfam AMP-binding enzyme C-terminal domain 475 551 IPR025110 -
Trre12g04863 568 Pfam AMP-binding enzyme 33 466 IPR000873 -
Trre12g04863 568 Gene3D - 461 565 IPR045851 -
Trre12g04863 568 Gene3D - 4 460 IPR042099 -
Trre12g04863 568 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04863 Trre-Chr12 62038959 62041889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04863 3 529 Monolignol Biosynthesis Gene Families AT1G51680 67.297 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04863 K01904 - gmx:547944 868.226