Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04862 ATGTGTTCCAAAGGTTCTAGTGTTATGATAATCGTATCCAAGGATGGGAGTGGACATTATACAAGTGTGGGTGAAGCTATCAGAAATGCTCCGTATTATAGTGAGCAACCTTACAACATTCACATTTTGGCAGGCATTTACGAAGAGTACATTCTGATTCCACCAAGTAAGACTAATATTAAGCTCCTAGGTGATGGTTCAACCCACACAATAATACTGGGTCGCCAACATGGTTCCACCATAGACATCCGTGGAAAGGGATTCATGGCACAGAACATTGGATTTGTGAACTCAGCGGGTTTAGATTCAAGCGCTGCAGTGGCCGTTCGTAACGAGGCAACCAATAGCATATTCTTTCAATGCTCCATCCAAGGATTCCAAGACACCTTATGGGCAGTTTCTGGCAGACAATTCTACAAGAACTGTGAAATCTATGGTACTGTTGATTTCATCTACGGCAATGCAGCCGCTGTATTTCAAGACTGCATGATTTACGCACGCTATCGACAGTTTGTGACATTCACGGCTCAGTCACGCGAGAATCCAAACGAGAAGACAGGTTTCACATTCCAACGTTGTAATTTCAGCATGTCACCTGAGGATGAGGAGAGAAAGTCAGAGGTGCGTGCCACGTTGGGTCGGCCTTGGAGGGCATATTCGACGGTTGCTATACTGCAGTGTTACATAGATTCAATGGTGGATCCTGGAGGTTGGGAACAGATGCCGGGACAGCCCATTGATAAGGTTACTTATGTGGAGTTTAAGAATGTTGGTCCTGGGTCTAACACTGATGGTAGAGTGAATTGGCCTGGTGTTAGAGTTCTTGGCAACCCAAATGAAGCACTCCCTTTCACTGCTTCCTATCTATTGGATGCTAACTCTTGGATTCCATCTACAGGTGTTCCATTTGATAGTGGACTTTAA 924 0.4481 MCSKGSSVMIIVSKDGSGHYTSVGEAIRNAPYYSEQPYNIHILAGIYEEYILIPPSKTNIKLLGDGSTHTIILGRQHGSTIDIRGKGFMAQNIGFVNSAGLDSSAAVAVRNEATNSIFFQCSIQGFQDTLWAVSGRQFYKNCEIYGTVDFIYGNAAAVFQDCMIYARYRQFVTFTAQSRENPNEKTGFTFQRCNFSMSPEDEERKSEVRATLGRPWRAYSTVAILQCYIDSMVDPGGWEQMPGQPIDKVTYVEFKNVGPGSNTDGRVNWPGVRVLGNPNEALPFTASYLLDANSWIPSTGVPFDSGL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04862 307 PANTHER PECTINESTERASE 10 297 - -
Trre12g04862 307 FunFam Pectinesterase 4 6 307 - -
Trre12g04862 307 Pfam Pectinesterase 10 292 IPR000070 GO:0030599|GO:0042545
Trre12g04862 307 Gene3D - 5 307 IPR012334 -
Trre12g04862 307 SUPERFAMILY Pectin lyase-like 5 306 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04862 Trre-Chr12 62028215 62035155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04862 1 307 Carbohydrate Esterase AT3G05620 41.896 3.95e-81 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04862 K01051 - gmx:102665195 441.425