Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04859 ATGGATAGTTCAAATGATATGGAGGGTAGTGGTAGTATTCATGAATTTATAGAAGTTGACAAGTTCAACGATGATGTTGGATGTTGGGAGCCTGCAGTCGAAATGTGTTTTTCTTCCGCGGACGATGTCAAATCTTTTTATCAAGAGTATGCTTTGAGAAAGGGGTTTGGGTGGAAGATTAGATCATCAAAAAAAGGAAAAGATGGAGAATTGTGCTACATGATACTTGCATGTTCAAGAGAAGGGTCTACAGTCTCAAAGGTTCCTTGTACATTGAAAACGCTTCCGACAAAGGTGAACAAATGTCCAGCTAGGATTTGTATTAAGATGGAGGAAGATTCCTTGTGGTACATCAAAAGGAACGACGTGCAATTGGAAGAGGAGATGTAG 390 0.3974 MDSSNDMEGSGSIHEFIEVDKFNDDVGCWEPAVEMCFSSADDVKSFYQEYALRKGFGWKIRSSKKGKDGELCYMILACSREGSTVSKVPCTLKTLPTKVNKCPARICIKMEEDSLWYIKRNDVQLEEEM 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04859 129 Pfam FAR1 DNA-binding domain 45 119 IPR004330 -
Trre12g04859 129 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04859 Trre-Chr12 61971684 61972359 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre12g04859 FAR1 8.2e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04859 - - cam:101510307 161.384