Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04856 ATGAACAAGAAGAAGAACCGGAACCAAAACCACCTGGGTCGTCGTATGTTTTCAAATCCCCTCAGCGAGATCCAAAACAACAACAACCAGCTTAGGCATAGTCGTAGCTGCACCACCACTCACCACCATGGCCCCACCGTAACCGTACCCGCCGATGACAATAAAGAAAACGCCACTGCCAACGTTTCTCTTCCAAAGTCACTATCAACAAACACAGACAAACAAAACAACAGGAGGATTGTTAAGCCTTCCTCGCTACAGTACTGCATGCAAATCAACGATCAATTTCAACTTGCTTCTTCTGATTCTTCCCACTTTTCCAACTCTTTGAAAATTTGGGACTACTCTGACTCTGAAGCTGCTCCTGCTTCCTCCTGGTCCACTTTACCCAACAAGTCTTTGATCTGCAGACCCTTGCCTATTGATATTGGAAGGTGCACATGTGTTATTGTCAAGGAACCAATGCCTCAGGGACTCTCTAATGGCACTTTCTTCTCTCTTTATACCTATGAAGGTCAGGGACGACAGAATAGGAAACTGGCTGTGGCCCACCACAACCGCCGCACTGCCCGCTCTCACTTCACCGTTGCTCAGAACGTCAAAGGACTACTCTCCAATTCTGATGATACTTTCCTCGGGACAGTCACCGCTAACCTCACCGGCTCAAAATACCACATTTGGGATCAGGGATATCGCCGTAAATCCCGTACTAAACAACCAAAACCCCCTCTTGCTGTTGTTGAGTATGTACCTACAATAGCAACATGTACAGGAACTCACAGAAGCATCAAAGCTTATATACCCAACCATCAATCTATGTCTTTCAAGAACACCAACCAGGTACAGCATATTAAGGGACTGCCAATGAATTGGGAGGGAAAATTGGACAAAGTCCATCAACTATACTCAAGGGATCCACTCTACAACAAGAGTACAAAACGATTTGAGCTTGACTATAGAGATAAAGGAAGGGCAGAACTTGGAATCCAGAGATCAGTCAAAAACTTTCAGCTCACTTTAGAGGAAAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTGGGAAAGTCTACATTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAG 1167 0.4516 MNKKKNRNQNHLGRRMFSNPLSEIQNNNNQLRHSRSCTTTHHHGPTVTVPADDNKENATANVSLPKSLSTNTDKQNNRRIVKPSSLQYCMQINDQFQLASSDSSHFSNSLKIWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPMPQGLSNGTFFSLYTYEGQGRQNRKLAVAHHNRRTARSHFTVAQNVKGLLSNSDDTFLGTVTANLTGSKYHIWDQGYRRKSRTKQPKPPLAVVEYVPTIATCTGTHRSIKAYIPNHQSMSFKNTNQVQHIKGLPMNWEGKLDKVHQLYSRDPLYNKSTKRFELDYRDKGRAELGIQRSVKNFQLTLEENGKQTILQLGRVGKSTFVMDYRYPLTGYQAFCICLASIDAKLCCIV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04856 388 Gene3D Tubby Protein; Chain A 127 387 IPR025659 -
Trre12g04856 388 MobiDBLite consensus disorder prediction 52 75 - -
Trre12g04856 388 SUPERFAMILY Tubby C-terminal domain-like 123 386 IPR025659 -
Trre12g04856 388 MobiDBLite consensus disorder prediction 1 22 - -
Trre12g04856 388 Pfam Tub family 137 381 IPR000007 -
Trre12g04856 388 PANTHER TUBBY-RELATED 36 385 - -
Trre12g04856 388 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Trre12g04856 388 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Trre12g04856 388 PRINTS Tubby superfamily signature 211 235 IPR000007 -
Trre12g04856 388 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Trre12g04856 388 MobiDBLite consensus disorder prediction 34 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04856 Trre-Chr12 61950794 61952630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04856 66 281 TUB Transcription Factor Family AT1G16070 54.464 7.64e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre12g04856 Tub 1.2e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04856 K19600 - rcu:8280277 475.322