Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04855 ATGTTTGAAACAAATGAAGAAGAAATGAACAAGAAGAAGAACCGGAACCAAAACCACCTGGGTCGTCGTATGTTTTCAAATCCCCTCAGCGAGATCCAAAACAACAACAACCAGCTTAGGCATAGTCGTAGCTGCACCACCACTCACCACCATGGCCCCACCGTAACCGTACCCGCCGATGACAATAAAGAAAACGCCACTGCCAACGTTTCTCTTCCAAAGTCACTATCAACAAACACAGACAAACAAAACAACAGGAGGATTGTTAAGCCTTCCTCGCTACAGTACTGCATGCAAATCAACGATCAATTTCAACTTGCTTCTTCTGATTCTTCCCACTTTTCCAACTCTTTGAAAATTTGGGACTACTCTGACTCTGAAGCTGCTCCTGCTTCCTCCTGGTCCACTTTACCCAACAAGTCTTTGATCTGCAGACCCTTGCCTATTGATATTGGAAGGTGCACATGTGTTATTGTCAAGGAACCAATGCCTCAGGGACTCTCTAATGGCACTTTCTTCTCTCTTTATACCTATGAAGGTCAGGGACGACAGAATAGGAAACTGGCTGTGGCCCACCACAACCGCCGCACTGCCCGCTCTCACTTCACCGTTGCTCAGAACGTCAAAGGACTACTCTCCAATTCTGATGATACTTTCCTCGGGACAGTCACCGCTAACCTCACCGGCTCAAAATACCACATTTGGGATCAGGGATATCGCCGTAAATCCCGTACTAAACAACCAAAACCCCCTCTTGCTGTTGTTGAGTATGTACCTACAATAGCAACATGTACAGGAACTCACAGAAGCATCAAAGCTTATATACCCAACCATCAATCTATGTCTTTCAAGAACACCAACCAGGTACAGCATATTAAGGGACTGCCAATGAATTGGGAGGGAAAATTGGACAAAGTCCATCAACTATACTCAAGGGATCCACTCTACAACAAGAGTACAAAACGATTTGAGCTTGACTATAGAGATAAAGGAAGGGCAGAACTTGGAATCCAGAGATCAGTCAAAAACTTTCAGCTCACTTTAGAGGAAAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTGGGAAAGTCTACATTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAG 1191 0.4475 MFETNEEEMNKKKNRNQNHLGRRMFSNPLSEIQNNNNQLRHSRSCTTTHHHGPTVTVPADDNKENATANVSLPKSLSTNTDKQNNRRIVKPSSLQYCMQINDQFQLASSDSSHFSNSLKIWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPMPQGLSNGTFFSLYTYEGQGRQNRKLAVAHHNRRTARSHFTVAQNVKGLLSNSDDTFLGTVTANLTGSKYHIWDQGYRRKSRTKQPKPPLAVVEYVPTIATCTGTHRSIKAYIPNHQSMSFKNTNQVQHIKGLPMNWEGKLDKVHQLYSRDPLYNKSTKRFELDYRDKGRAELGIQRSVKNFQLTLEENGKQTILQLGRVGKSTFVMDYRYPLTGYQAFCICLASIDAKLCCIV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04855 396 MobiDBLite consensus disorder prediction 1 21 - -
Trre12g04855 396 MobiDBLite consensus disorder prediction 60 83 - -
Trre12g04855 396 MobiDBLite consensus disorder prediction 1 15 - -
Trre12g04855 396 Pfam Tub family 145 389 IPR000007 -
Trre12g04855 396 PRINTS Tubby superfamily signature 373 395 IPR000007 -
Trre12g04855 396 PRINTS Tubby superfamily signature 219 243 IPR000007 -
Trre12g04855 396 PRINTS Tubby superfamily signature 309 326 IPR000007 -
Trre12g04855 396 PRINTS Tubby superfamily signature 352 371 IPR000007 -
Trre12g04855 396 SUPERFAMILY Tubby C-terminal domain-like 131 394 IPR025659 -
Trre12g04855 396 PANTHER TUBBY-RELATED 30 393 - -
Trre12g04855 396 Gene3D Tubby Protein; Chain A 135 395 IPR025659 -
Trre12g04855 396 MobiDBLite consensus disorder prediction 42 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04855 Trre-Chr12 61950794 61952654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04855 74 289 TUB Transcription Factor Family AT1G16070 54.464 7.57e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre12g04855 Tub 1.3e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04855 K19600 - rcu:8280277 475.322