Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04853 ATGGTGCGTCCGGCGGAGGAGACGCCACGGAGGGTGCTGTGGAACTCCAATGTCGACCTGGTGGTCCCCAATTTTCACACGCCAAGCGTCTACTTTTACAGGCCACCAAAGGCTGCCGCATCCAATTTGTTCTTCGATGCAAAGATTATGAAAGAGGCTCTGAGCAAGGTACTGGTCCCGTTCTATCCAATGGCAGCTCGTCTCCGCCGTGACGAAGATGGTCGTGTTGAACTTTATTGCGACGGACAAGGGGTACTCTTCGTGGAGGCTGATACAACCGCTTCCATTGATGACTTTGGAGACTTTGCTCCAACACTTGCTCTCCGTCGGTTAATCCCAGCCGTTGATTATTCTGCCGGTATTGAAACCTATCCACTGTTGGTGTTGCAGGTAACATATTTCAAATGTGGTGGAGTGTCGTTAGGAGTTGGTATGCAACACCATGTAGCTGATGGAGCCTCTGGTCTTCACTTCATCAATTCTTGGTCAGATGTTGCTCGTGGTCTTCATGTTTGCATTCCTCCATTCATTGACCGAACACTACTTCATGCTCGGGACCCACCTACACCTGTTTTTGATCACATTGAATACAAGCCTCCACCACCACCAATGCTTCAATCTGCAAACACTACTGCAGCTGCAGCAGTGTCTATTTTCAAATTGACCCGTGACCAGCTCAACATTTTGAAGGGTAAGTCCAAAGAAGATGGAAACACTGTCAACTATAGCTCCTATGAGATGTTGGCAGGTCATGTATGGAGAAGTGTAAGCAAGGCAAGAGCACTTCCTAATGATCAAGAAACCAAGTTGTACATTGCAACAGATGGTAGATCAAGGCTTCAACCTCCACTTCCACAAGGTTACTTTGGCAATGTCATATTCACAACTACTCCAATAGCAGTGGCAGGGGATTTAATGTCAAAACCAACATGGTATGCTGCTAGCAGAATCCACAATGCATTGTTACAAATGGACAATGATTATTTGAGATCTGCTTTGGACTATCTTGAGTTACAGCCTGATTTAAAAGCTCTTGTTCGTGGAGCACATACTTTTAAGTGTCCAAATCTTGGTATCACTAGTTGGGCAAGGTTACCAATCCATGATGCTGACTTTGGTTGGGGAAGACCCATATTCATGGGACCTGGTGGGATTGCATATGAGGGACTGTCTTTCATCATTCCAAGCTCAACAAATGATGGAAGTTTATCTGTGGCAATTGCTCTACCTCCAGAGCAGATGAAGCTGTTTCAGGAATTGTTCTATGACATTTAA 1275 0.4565 MVRPAEETPRRVLWNSNVDLVVPNFHTPSVYFYRPPKAAASNLFFDAKIMKEALSKVLVPFYPMAARLRRDEDGRVELYCDGQGVLFVEADTTASIDDFGDFAPTLALRRLIPAVDYSAGIETYPLLVLQVTYFKCGGVSLGVGMQHHVADGASGLHFINSWSDVARGLHVCIPPFIDRTLLHARDPPTPVFDHIEYKPPPPPMLQSANTTAAAAVSIFKLTRDQLNILKGKSKEDGNTVNYSSYEMLAGHVWRSVSKARALPNDQETKLYIATDGRSRLQPPLPQGYFGNVIFTTTPIAVAGDLMSKPTWYAASRIHNALLQMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWARLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALPPEQMKLFQELFYDI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04853 424 Gene3D - 205 424 IPR023213 -
Trre12g04853 424 FunFam Tryptamine hydroxycinnamoyl transferase 202 422 - -
Trre12g04853 424 Pfam Transferase family 1 422 - -
Trre12g04853 424 FunFam Spermidine hydroxycinnamoyl transferase 1 197 - -
Trre12g04853 424 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 1 422 - -
Trre12g04853 424 Gene3D - 1 199 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04853 Trre-Chr12 61942078 61945217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04853 1 424 Monolignol Biosynthesis Gene Families AT5G48930 75.878 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04853 K13065 - gmx:100801923 749.969