Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04852 ATGTTGATCAACGTGAAGGACTCGACGATGGTGCGTCCGGCGGAGGAGACGCCACGGAGGGTGCTGTGGAACTCCAATGTCGACCTGGTGGTCCCCAATTTTCACACGCCAAGCGTCTACTTTTACAGGCCACCAAAGGCTGCCGCATCCAATTTGTTCTTCGATGCAAAGATTATGAAAGAGGCTCTGAGCAAGGTACTGGTCCCGTTCTATCCAATGGCAGCTCGTCTCCGCCGTGACGAAGATGGTCGTGTTGAACTTTATTGCGACGGACAAGGGGTACTCTTCGTGGAGGCTGATACAACCGCTTCCATTGATGACTTTGGAGACTTTGCTCCAACACTTGCTCTCCGTCGGTTAATCCCAGCCGTTGATTATTCTGCCGGTATTGAAACCTATCCACTGTTGGTGTTGCAGGTAACATATTTCAAATGTGGTGGAGTGTCGTTAGGAGTTGGTATGCAACACCATGTAGCTGATGGAGCCTCTGGTCTTCACTTCATCAATTCTTGGTCAGATGTTGCTCGTGGTCTTCATGTTTGCATTCCTCCATTCATTGACCGAACACTACTTCATGCTCGGGACCCACCTACACCTGTTTTTGATCACATTGAATACAAGCCTCCACCACCACCAATGCTTCAATCTGCAAACACTACTGCAGCTGCAGCAGTGTCTATTTTCAAATTGACCCGTGACCAGCTCAACATTTTGAAGGGTAAGTCCAAAGAAGATGGAAACACTGTCAACTATAGCTCCTATGAGATGTTGGCAGGTCATGTATGGAGAAGTGTAAGCAAGGCAAGAGCACTTCCTAATGATCAAGAAACCAAGTTGTACATTGCAACAGATGGTAGATCAAGGCTTCAACCTCCACTTCCACAAGGTTACTTTGGCAATGTCATATTCACAACTACTCCAATAGCAGTGGCAGGGGATTTAATGTCAAAACCAACATGGTATGCTGCTAGCAGAATCCACAATGCATTGTTACAAATGGACAATGATTATTTGAGATCTGCTTTGGACTATCTTGAGTTACAGCCTGATTTAAAAGCTCTTGTTCGTGGAGCACATACTTTTAAGTGTCCAAATCTTGGTATCACTAGTTGGGCAAGGTTACCAATCCATGATGCTGACTTTGGTTGGGGAAGACCCATATTCATGGGACCTGGTGGGATTGCATATGAGGGACTGTCTTTCATCATTCCAAGCTCAACAAATGATGGAAGTTTATCTGTGGCAATTGCTCTACCTCCAGAGCAGATGAAGCTGTTTCAGGAATTGTTCTATGACATTTAA 1302 0.457 MLINVKDSTMVRPAEETPRRVLWNSNVDLVVPNFHTPSVYFYRPPKAAASNLFFDAKIMKEALSKVLVPFYPMAARLRRDEDGRVELYCDGQGVLFVEADTTASIDDFGDFAPTLALRRLIPAVDYSAGIETYPLLVLQVTYFKCGGVSLGVGMQHHVADGASGLHFINSWSDVARGLHVCIPPFIDRTLLHARDPPTPVFDHIEYKPPPPPMLQSANTTAAAAVSIFKLTRDQLNILKGKSKEDGNTVNYSSYEMLAGHVWRSVSKARALPNDQETKLYIATDGRSRLQPPLPQGYFGNVIFTTTPIAVAGDLMSKPTWYAASRIHNALLQMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWARLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALPPEQMKLFQELFYDI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04852 433 Gene3D - 1 208 IPR023213 -
Trre12g04852 433 FunFam Spermidine hydroxycinnamoyl transferase 1 206 - -
Trre12g04852 433 Gene3D - 214 433 IPR023213 -
Trre12g04852 433 FunFam Tryptamine hydroxycinnamoyl transferase 211 431 - -
Trre12g04852 433 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 431 - -
Trre12g04852 433 Pfam Transferase family 3 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04852 Trre-Chr12 61942051 61945217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04852 1 433 Monolignol Biosynthesis Gene Families AT5G48930 75.688 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04852 K13065 - gmx:100801923 764.222