Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04851 ATGATGCGGCGTTGTGATCTTCCTGCCCGTGATCTTCGCCTACTTGATCCTGTGTTTGTCTATCCATCAACAATCCTTGGTAGGGAGAAGGCTATTGTTGTAAATCTGGAGCAGATACGCTGTATTATTACAGCAGATGAGGTTCTTCTATTGAATTCCCTTGATAAATATGTGTTGCAATATGTGATTGATCTCCAACGGCGGTTGACGACAACTGGGGGAGGTGAGGTGGGCGATGTAGGCGAGGTTTGGCAATCAGACCATTCTGAAATGAACCAAAGGAGAGGCAGTAGGAATTTTGAAAATTTATACAGCACTTCCCCTGATTATTTACCATTTGAATTCAGGGCTCTTGAAGTTGCCCTGGAGGCGGCATGCACATTTCTTGACACCCAGGCAGCAGAGTTAGAAATTGAGGCTTATCCGTTGCTGGATGAACTGACATCAAAGATCAGTACTCTAAATTTGGAACGTGTTCGTCGATTGAAAAGCAGACTTGTTGCCCTGACTAGGAGGGTTCAAAAGGTCAGAGACGAAATAGAGCAGCTTATGGATGATGACGGTGATATGGCTGAAATGTACCTTACGGAGAAGAAAAGACGGATGGAATTGTCATTTTATGGAGATCAGTCTATGCTTGGATATAGATCAGGTGACGGTGCATCTATCTCTGCTCCAGTCACTCCTGTTTCATCACCACCTGATTCGAGAAGGCTTGAGAAGAGCTTGAGCATTGCTAGGAGTCGACACGAGAGCATGAGGAGTAGCGAAAGTAATACAGAAAATATAGAAGAGCTTGAGATGTTGTTAGAAGCATACTTTGTTGTCATTGACAGCACTCTAAACAAGTTGACATCGTTAAAAGAATACATCGATGACACGGAAGATTTCATCAACATTCAACTGGATAATGTGCGGAATCAGCTTATCCAGTTTGAGCTTTTGCTCACAACTGCAACATTTGTTGTTGCAATCTTTGGAGTGGTGGCAGGAGTATTTGGGATGAACTTTGAAATTCCATTCTTTGATGTCCCATCTGCATTCCAGTGGGTCCTTATAATAACAGGAGTTTGTGGAGTGTGTATATTTTCTGCATTTGTATGGTTCTTCAAGTACAGAAGACTCATGCCCCTATAA 1137 0.4283 MMRRCDLPARDLRLLDPVFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDKYVLQYVIDLQRRLTTTGGGEVGDVGEVWQSDHSEMNQRRGSRNFENLYSTSPDYLPFEFRALEVALEAACTFLDTQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMELSFYGDQSMLGYRSGDGASISAPVTPVSSPPDSRRLEKSLSIARSRHESMRSSESNTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGVFGMNFEIPFFDVPSAFQWVLIITGVCGVCIFSAFVWFFKYRRLMPL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04851 378 Coils Coil 159 186 - -
Trre12g04851 378 Gene3D Magnesium transport protein CorA, transmembrane region 54 309 - -
Trre12g04851 378 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 315 368 IPR045863 -
Trre12g04851 378 Gene3D - 1 53 - -
Trre12g04851 378 FunFam Magnesium transporter MRS2-1 316 376 - -
Trre12g04851 378 CDD Mrs2_Mfm1p-like 1 375 IPR039204 -
Trre12g04851 378 Pfam CorA-like Mg2+ transporter protein 255 370 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Trre12g04851 378 Gene3D Magnesium transport protein CorA, transmembrane region 316 376 - -
Trre12g04851 378 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 376 IPR039204 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04851 Trre-Chr12 61927425 61929881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04851 1 378 MRS2 Gene Family AT1G16010 85.488 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04851 K16075 - gmx:100779803 629.402