Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04850 ATGGCAGATCTCAAAGAGCGACTGCTCCCGCTGAAACCTGCATCAGCTATTAACTTAAGAGAGTCCGTCAACCGACCAACTGCCTCTGGAAGGCATCCTTTTCAAGGAGTCGATGTTGTGGAGGTCAAGAAGCGAGGCCAGGGTCTTAAATCCTGGATTCGTGTTGACACTTCTGGAAATTCACAGGTCATTGAGGTCGACAAGTTTACTATGATGCGGCGTTGTGATCTTCCTGCCCGTGATCTTCGCCTACTTGATCCTGTGTTTGTCTATCCATCAACAATCCTTGGTAGGGAGAAGGCTATTGTTGTAAATCTGGAGCAGATACGCTGTATTATTACAGCAGATGAGGTTCTTCTATTGAATTCCCTTGATAAATATGTGTTGCAATATGTGATTGATCTCCAACGGCGGTTGACGACAACTGGGGGAGGTGAGGTGGGCGATGTAGGCGAGGTTTGGCAATCAGACCATTCTGAAATGAACCAAAGGAGAGGCAGTAGGAATTTTGAAAATTTATACAGCACTTCCCCTGATTATTTACCATTTGAATTCAGGGCTCTTGAAGTTGCCCTGGAGGCGGCATGCACATTTCTTGACACCCAGGCAGCAGAGTTAGAAATTGAGGCTTATCCGTTGCTGGATGAACTGACATCAAAGATCAGTACTCTAAATTTGGAACGTGTTCGTCGATTGAAAAGCAGACTTGTTGCCCTGACTAGGAGGGTTCAAAAGGTCAGAGACGAAATAGAGCAGCTTATGGATGATGACGGTGATATGGCTGAAATGTACCTTACGGAGAAGAAAAGACGGATGGAATTGTCATTTTATGGAGATCAGTCTATGCTTGGATATAGATCAGGTGACGGTGCATCTATCTCTGCTCCAGTCACTCCTGTTTCATCACCACCTGATTCGAGAAGGCTTGAGAAGAGCTTGAGCATTGCTAGGAGTCGACACGAGAGCATGAGGAGTAGCGAAAGTAATACAGAAAATATAGAAGAGCTTGAGATGTTGTTAGAAGCATACTTTGTTGTCATTGACAGCACTCTAAACAAGTTGACATCGTTAAAAGAATACATCGATGACACGGAAGATTTCATCAACATTCAACTGGATAATGTGCGGAATCAGCTTATCCAGTTTGAGCTTTTGCTCACAACTGCAACATTTGTTGTTGCAATCTTTGGAGTGGTGGCAGGAGTATTTGGGATGAACTTTGAAATTCCATTCTTTGATGTCCCATCTGCATTCCAGTGGGTCCTTATAATAACAGGAGTTTGTGGAGTGTGTATATTTTCTGCATTTGTATGGTTCTTCAAGTACAGAAGACTCATGCCCCTATAA 1347 0.4373 MADLKERLLPLKPASAINLRESVNRPTASGRHPFQGVDVVEVKKRGQGLKSWIRVDTSGNSQVIEVDKFTMMRRCDLPARDLRLLDPVFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDKYVLQYVIDLQRRLTTTGGGEVGDVGEVWQSDHSEMNQRRGSRNFENLYSTSPDYLPFEFRALEVALEAACTFLDTQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMELSFYGDQSMLGYRSGDGASISAPVTPVSSPPDSRRLEKSLSIARSRHESMRSSESNTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGVFGMNFEIPFFDVPSAFQWVLIITGVCGVCIFSAFVWFFKYRRLMPL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04850 448 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 30 446 IPR039204 -
Trre12g04850 448 Coils Coil 229 256 - -
Trre12g04850 448 CDD Mrs2_Mfm1p-like 52 445 IPR039204 -
Trre12g04850 448 FunFam Magnesium transporter MRS2-1 40 123 - -
Trre12g04850 448 Gene3D - 37 123 - -
Trre12g04850 448 Gene3D Magnesium transport protein CorA, transmembrane region 124 379 - -
Trre12g04850 448 Gene3D Magnesium transport protein CorA, transmembrane region 386 446 - -
Trre12g04850 448 Pfam CorA-like Mg2+ transporter protein 325 440 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Trre12g04850 448 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 385 438 IPR045863 -
Trre12g04850 448 FunFam Magnesium transporter MRS2-1 386 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04850 Trre-Chr12 61927425 61930091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04850 1 448 MRS2 Gene Family AT1G16010 83.778 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04850 K16075 - gmx:100779803 738.028