Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04848 ATGCCTTCAAGACAAATACCTTCTACAAGTTCCAATTTATTCACCAAACCCAAGTTCATAATCATAGCACTCACCATTTCAGCCTCTGTTGTGATTTTCTTCTCAATCCTTTACTTCCTTTACCATCTTTGGCATTCTCTTGTACACAGAGCCAAGACCATCCCTTTTGATGCAAGTGCTCCTTTGAAGCTCCAAAGATACTCCTACAAAGACTTAAAGCTATCCACCAATGGCTTTGACACTTCAAATATCATTGGCAAAGGTGGTTCTGGTACTGTTTTCAAGGGTGTACTTAAAGATGGAAAATTTATTGCCATCAAACGGTTGGACTCATTGTCTTTGCAATCAGAGAGAGAGTTTCAAAATGAGTTGCAGATTCTTGGAGGGTTGAGATCACCCTTTTTGGTGACCCTTTTGGGCTATTGTGTTGAAAAGAATAAGAGAATTTTGGTGTATGAGTATATGCCTAACACAAGCTTGCAAGAGTCACTCTTTGGTGATGAGTGTTTTGGTTTGAGTTGGGAGAAAAGGTTTTGCATAATAATGGATGTTGCTAGAGCATTGGAGTTTTTGCACCTTGGATGTGATCCACCTGTGATTCATGGTGATATTAAGCCAAGCAATGTGTTGCTTGATGCTGAGTTCCACGGGAAGATCTCGGATTTTGGTTTGTCAAGGATTAAGGTGGAGGAGGGTGAATTTGGAGCTGACTTGTTTAGTCAGGATTTGGGGAAGAGTCAAGATCTTTGGAAAAGCCAAGAAGACCTTTCAGGTAATTTGACTGTAGAAACTCCTGTAATTGGCACTCCTGTTGAGAGTGTTAGTGAAGTTGATTTTGCTCTTGCTTTGCAAGCCTCTTCTTCATCCAAAAATAGTAGGACTTGTTTAAATGTTAAAGCTTTGAACTTGAACTCTTTGAATTATAATGCTAATATTGTTGGTGAAAGTGAAAGTAGGAGTGTAAATACTACAAAGGGTAAGGAAATTTCAAGTTTGGAAATAGGAGGAGGAGGAAGGGATGATTGGAATAATAATAATAATAATAATAATATGTTTGTTCCTTATGATGATGAGTTTTATAGCACTGATTATAGTAAGGAGTTGGCTGTTAATAATGCTTGTTTGGTTGATGATGAGAAGGAAAATGGGAAACAGTGGGGAAAAGATTGGTGGTGGAAACAAGATGGAAGTGGTGAGTTATGTAGTAAAGACTATGTCATGGAGTGGATTGGGAGTCAGATTTGTCCATCAAATGCTGATTGGGATCATGATGGTATTGATGGTACTAAGAACAACAGCATTCAGGAGAAATCAGAGTTGGAAAGTAGTTTAAGTCCAACAGGTAAAGCCAGTGATGCAATTGCTGCAAATGGACCACAATTACAGGTATCTGTAATGGAAGATGCTGCAGATAATGGAGTTGTTGATATGAAAGAACTGAAGGGAAAGAAAAGCCACAAGATGATCAAGAATAGGAAGATGCAAGAGTGGTGGAAAGAAGAACATCTTGCTGAATTAAGCAAGAAGAAGAACTCCAACAAGCTGAGAAGTCTTCAAACTAAATGGAAGAAAGGCTTGAAAGTGCCTCATTTTGGTTTGGGTAGAAGGTTCTATCTTTGCCAACGTCGTAATAAGAACTATGGAGAGGAAGGACAGCATGAGTGTGAACAAAATGGTGAGTTTAGCTTCAGAAGAGGTTGGAGGAAAAAAAGCAGCACGCGTTCGATTGGAAGCGACATGTGGAGTGGAGATCTTTTCAGCCGCGAACTCAGCAGCACAACTAGTATGAGAGGTACACTGTGTTATGTAGCACCGGAATATGGAGGGTGTGGATTCTTAATGGAGAAAGCTGATATATACAGTTTTGGAGTTTTGATTCTTGTAATTGTGTCTGGTAGAAGACCATTACATGTTCTTGCATCTCCTATGAAGCTAGAGAAAGCTAACTTAATTAGCTGGTGTAGACACTTAGCTCAAGCTGGTGGTAGTAACATTTTAGAACTAGTTGATGAGAAATTGAAAGAAGATGATTACAACAAGGAACAAGCAAGCATGTGTATCAACTTGGCACTCACTTGTTTACAGAAAATTCCAGAGTTGAGGCCAGATATTGGAGACATTGTTAAGATTTTGAAGGGAGAGATGGAGCTTCCACCACTTCCATTTGAGTTCTCTCCTTCTCCGCCTTCCAGATTATACAGCAGATCAAGGAGAAAACAGAAGAGCAATGTAGAATAA 2238 0.3932 MPSRQIPSTSSNLFTKPKFIIIALTISASVVIFFSILYFLYHLWHSLVHRAKTIPFDASAPLKLQRYSYKDLKLSTNGFDTSNIIGKGGSGTVFKGVLKDGKFIAIKRLDSLSLQSEREFQNELQILGGLRSPFLVTLLGYCVEKNKRILVYEYMPNTSLQESLFGDECFGLSWEKRFCIIMDVARALEFLHLGCDPPVIHGDIKPSNVLLDAEFHGKISDFGLSRIKVEEGEFGADLFSQDLGKSQDLWKSQEDLSGNLTVETPVIGTPVESVSEVDFALALQASSSSKNSRTCLNVKALNLNSLNYNANIVGESESRSVNTTKGKEISSLEIGGGGRDDWNNNNNNNNMFVPYDDEFYSTDYSKELAVNNACLVDDEKENGKQWGKDWWWKQDGSGELCSKDYVMEWIGSQICPSNADWDHDGIDGTKNNSIQEKSELESSLSPTGKASDAIAANGPQLQVSVMEDAADNGVVDMKELKGKKSHKMIKNRKMQEWWKEEHLAELSKKKNSNKLRSLQTKWKKGLKVPHFGLGRRFYLCQRRNKNYGEEGQHECEQNGEFSFRRGWRKKSSTRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGGSNILELVDEKLKEDDYNKEQASMCINLALTCLQKIPELRPDIGDIVKILKGEMELPPLPFEFSPSPPSRLYSRSRRKQKSNVE 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04848 745 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Trre12g04848 745 PANTHER OS07G0586332 PROTEIN 12 740 IPR044576 -
Trre12g04848 745 Gene3D Phosphorylase Kinase; domain 1 46 154 - -
Trre12g04848 745 Gene3D Transferase(Phosphotransferase) domain 1 155 270 - -
Trre12g04848 745 Gene3D Transferase(Phosphotransferase) domain 1 526 717 - -
Trre12g04848 745 Pfam Protein kinase domain 81 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04848 745 MobiDBLite consensus disorder prediction 420 452 - -
Trre12g04848 745 SUPERFAMILY Protein kinase-like (PK-like) 59 731 IPR011009 -
Trre12g04848 745 SMART serkin_6 79 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04848 745 MobiDBLite consensus disorder prediction 431 450 - -
Trre12g04848 745 MobiDBLite consensus disorder prediction 722 745 - -
Trre12g04848 745 FunFam putative receptor-like protein kinase At1g80870 155 267 - -
Trre12g04848 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Trre12g04848 745 FunFam Receptor-like serine/threonine-protein kinase At4g25390 48 154 - -
Trre12g04848 745 FunFam Receptor-like serine/threonine-protein kinase At4g25390 565 717 - -
Trre12g04848 745 ProSiteProfiles Protein kinase domain profile. 79 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04848 Trre-Chr12 61919094 61921331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04848 576 711 Receptor kinase-like Gene Family AT3G58690 31.915 3.99e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Trre12g04848 Pkinase 2.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04848 - - tpra:123899844 1294.64