Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04842 ATGGATGACTTCTTCGCTCTAATTTGCCCTAATTCTCCATTTGTATGGGATGGGAAAGGATTCTCCGAGTGTTTCGAAGACATATATCCTTATTGTTTTGCAGTGAATATAGTGACTATTGTTATGATTGTTGTGCTTGGAATTAAACAAAAAATTGGCGGTCGAAATGCTCAGAGATCATTCACTCAGAAGACTCTTCCAGAGAAATTTGTCCTGGATTTTGTACCCGCCATTGGAGCATGTTTTTCAGTTTTGGAAATAATTTTTCTGCTGAAGAAAGAAAATGATGGCCACTTTATTGGATATCAAAAGTGGTTATATAGCTGCTGTTCTGAGTTGTTTGTGTGGGCAAATGTCATTCTCTTTACGAAGTGTGCAAGCAGCAGCCATAGCATAGTCTTCAACCGTGTCTTATGTTTCTGGTGGATTCTAAAACCGATTTTGGGGATTTTGCATTTGATAACAAAGTTTCCATCGTTGGAGGTTTCAGTATGCATCATGGAAAGCTTAGTTGTTCTCTTGAATGTCTCATTTGGCATAGTTATCAATGTGATCAGGATAAAAAGATCATCTTCCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCCAATGGAGGGGACCTTGAGGAAGGTGGCAATCATGACCTTGGAAATCATAGTACCTTTTTGGATTTTATGACTTTCAAATTCATAAGTCCCGTGATGAATCAAGGTGTGCTAAAGCAATTGGACTCTGATGATCTTCTGCCGCTACTACCTGATATGAGTCCTTCTTTCTGTCATGATATAATTTTATCGAGTTGGCGAGATCAATTGAGTAATAATGGTTCAAACCCTTCCTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCTGCCTTGGTTTATTGAAGGTGATAAATGATGGTATTGGTTTTGCGGGGCCATTGCTTCTCAATAAGCTGATCAAGTTTCTTCAGCAAGGTTCAGCAAGTTGGGATGGGTATTTACTTGCATTATCCTTGGGTATCACATCAATAGTTAAATCTTTTCTAGATACACAGTATACTTTTCGTCTTTCCAAACTGAAGCTAAAGTTGCGATCTAGTATCATGACCCTAATCTATGAGAAGTGTCTATATGTGAACCTAGCAGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTTATGTCGGTGGATGCTGATCGAACTGTCAACTTGTGTACTAGTTTCCATGATATTTGGAGTCTGCCTTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTCGCATTTGTGTCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCAAAATTGATTGCAAGGGCCACTGAGCAAATGATGAAGGAGAAGGATGAAAGGATTCGCAGGACCGGGGAACTATTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCAAGTTGGTTGATGGAGACAAGATCTTTAGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCATCACTATTTTCTCTTTGCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAACGGTTTTCACTTGTCTTGCTTTGTTTAACACTTTGATTTCACCACTTAATTCATTCCCTTGGGTGATTAATGGATTGATTGATTTCTTCATATCCTCCAGACGGTTGAGTAGGTTTCTCTCTTGCCCTGAACATAGACGCAAAGTGGGAGAGAACAGTTCCTGTTCTTCATCATTCCTGAGTAAACAGCCTGATTCTTTACAAGATATAGCTGTCTCTATGCAAGATGCATGCTGTTCTTGGTCAAGTAGTGATGAACAAGCATTAAATCCGGCATTGGATCATGTGACTCTTAGCCTATCCAAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATGCCTGTTATATTCAATTCTCGAAGAAATGCGGCTTGATCATGGATCTATTTATTCCAATGGATCTATAGCTTATGTACCACAGGTCCCTTGGATTATATCTGGAACAGTACGTGACAATATATTATTCGGGAAAAGCTATCATCCTGAAAGGTATGCAGATACAGTAAAGGCATGTGCATTGGATGTCGATATCTCATTGATGGTTGGTGGTGACATGGCTTATGTTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGTATTGTATCATGACTCAGATGTTATTATGCTTGACGACGTCCTGAGTGCAGTTGATGTACAAGTTGCTCGGTGGATCTTACACAATGCCATTCTTGGTCCTCTTATGAAGGGAAAAACCCGATTGCTTTGTACCCACAACACTCAGGCAATATCTTCTGCTGATATGATTGTTGTATTGGACAAAGGACACTTAAAGTGGATGGGAAGTTCAGCTGAATTTCCAACTTCTTCATATACAGCATTCTCCCCATTGAATGAAATAGATTCAACTTCACATAATCAGAAATCTTGCAGCACAAATTCTTCTATATCCAAGGAGCAGTCTCTTCCTGATAGAATTATCATGGATTCTCTGGAGGGAGCAGAGGATGTAATTGAAGTTGAGTTGAGGAAGGAGGGAAAAGTTGAACTCAGAGTGTATAAGAACTATGCTGCTTTTACTGGTTGGTTCATTGCCGTTATTATATGTCTATCAGCTATTCTGATGCAAGCTTCGCGTAATGGAAATGATTTATGGCTTTCATATTGGGTGGATACCACAACGGAAGACGGTCAAACAAGCTACTCTATGTCTTTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCCTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCGGCAACTAAGGTACACAATAGACTTCTCAGCAAACTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCTGGCGGGAGAATACTGAATAGGTTATCTTCAGATCTTTATACAATAGATGATTCTCTTCCATTTATTATGAACATTCTCCTGGCTAATTTTGTAGGACTGTTGGGTATTGCAATTATTTTATCTTACGTACAGGTCTTGTTCTTAGTTCTGTTATTGCCCTTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCGAGAGAATTGCGAAGACTGGACAGTGTTTCTCGCTCTCCAATATATACATCTTTCACCGAAACACTTGATGGATCATCAACTATTAGAGCCTTTAAATCCGAGGACTTCTTCTTCGCCAAATTTACTGACTACGTAACATTATATCAGAAGACTTCCTATACAGAGATGGTGGCAAGTCTGTGGCTTTCCCTGCGTCTTCAGTTATTAGCTGCATTTATCATCTCATTCATAGCCCTGATGGCTGTTGTTGGTTCTCATGACAGTCTGCCTATCAACTTTGGCACCCCAGGACTGGTTGGATTGGCCCTCTCGTACGCAGCTCCAATTGTGTCTCTGCTGGGGAGTTTTCTAACAAGTTTCACCGAAACAGAAAAGGAAATGGTTTCAATTGAAAGAGCCCTTCAATACATGGATATTCCCCAAGAAGAACAAGCTGGATGTCTAAACTTGAATCCAGATTGGCCAAATCAAGGGGTTATTGAATTCCAACAAGTTACTTTGAAATATATGCCATCTTTACCAGCTTCACTCTGCAATCTTAGTTTTAAAATTGAAGGAGGGACACAGGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCACTTTTTCGTCTTACCCCAATATGTGCAGGCTCCATCACAGTTGATGGCATGGACATTCGAAATATTCCTGTGAGAGAACTACGAACACATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCATTAAGGGATAACCTAGATCCATTCAAAAGGAACGATGACTCAAAAATTTGGGATGCACTGGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGTAGCTGGTGGGCTGGATATTCTTGTAAAGGAAGGAGGGATGTCATTTTCAGTTGGCCAGCGGCAGCTTCTTTGCCTTGCACGTGCACTTCTCAAATCTTCAAAGGTTCTTTGTTTGGATGAATGCACTGCCAGTGTCGACATTCAAACTGCTTCACTGCTGCAAAGCACAATATCCAGTGAATGCAAAGGAATGACGGTGGTCACAATTGCTCACCGGATTTCAACTGTCATAAATATGGATAACATTCTAATTCTTGATCATGGGAACATGGCTGAACAAGGAAATCCACAGATTCTTCTGAAAGATGGCACCTCTATATTTGCTAGTTTTGTTAAAGCGTCATCCATGTAA 4413 0.3993 MDDFFALICPNSPFVWDGKGFSECFEDIYPYCFAVNIVTIVMIVVLGIKQKIGGRNAQRSFTQKTLPEKFVLDFVPAIGACFSVLEIIFLLKKENDGHFIGYQKWLYSCCSELFVWANVILFTKCASSSHSIVFNRVLCFWWILKPILGILHLITKFPSLEVSVCIMESLVVLLNVSFGIVINVIRIKRSSSKSSLLEDPLLSNGGDLEEGGNHDLGNHSTFLDFMTFKFISPVMNQGVLKQLDSDDLLPLLPDMSPSFCHDIILSSWRDQLSNNGSNPSLFRALCSAYGWPYLCLGLLKVINDGIGFAGPLLLNKLIKFLQQGSASWDGYLLALSLGITSIVKSFLDTQYTFRLSKLKLKLRSSIMTLIYEKCLYVNLAERSKFTNGEIQTFMSVDADRTVNLCTSFHDIWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISKLIARATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPSLFSLCTFGLFALMGHQLDAATVFTCLALFNTLISPLNSFPWVINGLIDFFISSRRLSRFLSCPEHRRKVGENSSCSSSFLSKQPDSLQDIAVSMQDACCSWSSSDEQALNPALDHVTLSLSKGSFVAVIGEVGSGKSCLLYSILEEMRLDHGSIYSNGSIAYVPQVPWIISGTVRDNILFGKSYHPERYADTVKACALDVDISLMVGGDMAYVGEKGVNLSGGQRARLALARVLYHDSDVIMLDDVLSAVDVQVARWILHNAILGPLMKGKTRLLCTHNTQAISSADMIVVLDKGHLKWMGSSAEFPTSSYTAFSPLNEIDSTSHNQKSCSTNSSISKEQSLPDRIIMDSLEGAEDVIEVELRKEGKVELRVYKNYAAFTGWFIAVIICLSAILMQASRNGNDLWLSYWVDTTTEDGQTSYSMSFYLAILCLFCIMNSLFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVLFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFAKFTDYVTLYQKTSYTEMVASLWLSLRLQLLAAFIISFIALMAVVGSHDSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSIERALQYMDIPQEEQAGCLNLNPDWPNQGVIEFQQVTLKYMPSLPASLCNLSFKIEGGTQVGIIGRTGAGKSSVLNALFRLTPICAGSITVDGMDIRNIPVRELRTHLAIVPQSPFLFEGSLRDNLDPFKRNDDSKIWDALEKCHVKEEVEVAGGLDILVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTASVDIQTASLLQSTISSECKGMTVVTIAHRISTVINMDNILILDHGNMAEQGNPQILLKDGTSIFASFVKASSM 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04842 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 617 844 IPR003439 GO:0005524
Trre12g04842 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 832 IPR027417 -
Trre12g04842 1470 Gene3D - 1218 1468 IPR027417 -
Trre12g04842 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 298 573 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g04842 1470 FunFam ATP-binding cassette subfamily C member 10 273 590 - -
Trre12g04842 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1466 IPR003439 GO:0005524
Trre12g04842 1470 CDD ABCC_MRP_domain1 617 820 - -
Trre12g04842 1470 CDD ABCC_MRP_domain2 1231 1450 - -
Trre12g04842 1470 Gene3D ABC transporter type 1, transmembrane domain 878 1217 IPR036640 GO:0005524|GO:0016020
Trre12g04842 1470 Pfam ABC transporter transmembrane region 295 561 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g04842 1470 Pfam ABC transporter transmembrane region 912 1161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g04842 1470 ProSitePatterns ABC transporters family signature. 1369 1383 IPR017871 GO:0005524|GO:0016887
Trre12g04842 1470 Gene3D - 592 866 IPR027417 -
Trre12g04842 1470 SUPERFAMILY ABC transporter transmembrane region 907 1215 IPR036640 GO:0005524|GO:0016020
Trre12g04842 1470 ProSitePatterns ABC transporters family signature. 745 759 IPR017871 GO:0005524|GO:0016887
Trre12g04842 1470 FunFam ABC transporter C family member 5 875 1216 - -
Trre12g04842 1470 Pfam ABC transporter 638 770 IPR003439 GO:0005524
Trre12g04842 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 911 1198 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g04842 1470 SMART AAA_5 1259 1443 IPR003593 GO:0016887
Trre12g04842 1470 SMART AAA_5 647 821 IPR003593 GO:0016887
Trre12g04842 1470 CDD ABC_6TM_MRP7_D2_like 910 1210 - -
Trre12g04842 1470 Gene3D ABC transporter type 1, transmembrane domain 282 589 IPR036640 GO:0005524|GO:0016020
Trre12g04842 1470 FunFam ABC transporter C family member 13 599 854 - -
Trre12g04842 1470 SUPERFAMILY ABC transporter transmembrane region 282 758 IPR036640 GO:0005524|GO:0016020
Trre12g04842 1470 FunFam ATP-binding cassette (ABC) transporter, putative 1219 1467 - -
Trre12g04842 1470 Pfam ABC transporter 1251 1397 IPR003439 GO:0005524
Trre12g04842 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1457 IPR027417 -
Trre12g04842 1470 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 219 1468 - -
Trre12g04842 1470 CDD ABC_6TM_MRP7_D1_like 296 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04842 Trre-Chr12 61859174 61872953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04842 638 871 Calmodulin-binding Proteins AT2G36910 27.059 2.26e-18 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04842 K05674 - gmx:100814181 2399.01