Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04841 ATGGATGACTTCTTCGCTCTAATTTGCCCTAATTCTCCATTTGTATGGGATGGGAAAGGATTCTCCGAGTGTTTCGAAGACATTGTTTTAGGTTTTGCAGTGAATATAGTGACTATTGTTATGATTGTTGTGCTTGGAATTAAACAAAAAATTGGCGGTCGAAATGCTCAGAGATCATTCACTCAGAAGACTCTTCCAGAGAAATTTGTCCTGGATTTTGTACCCGCCATTGGAGCATGTTTTTCAGTTTTGGAAATAATTTTTCTGCTGAAGAAAGAAAATGATGGCCACTTTATTGGATATCAAAAGTGGTTATATAGCTGCTGTTCTGAGTTGTTTGTGTGGGCAAATGTCATTCTCTTTACGAAGTGTGCAAGCAGCAGCCATAGCATAGTCTTCAACCGTGTCTTATGTTTCTGGTGGATTCTAAAACCGATTTTGGGGATTTTGCATTTGATAACAAAGTTTCCATCGTTGGAGGTTTCAGTATGCATCATGGAAAGCTTAGTTGTTCTCTTGAATGTCTCATTTGGCATAGTTATCAATGTGATCAGGATAAAAAGATCATCTTCCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCCAATGGAGGGGACCTTGAGGAAGGTGGCAATCATGACCTTGGAAATCATAGTACCTTTTTGGATTTTATGACTTTCAAATTCATAAGTCCCGTGATGAATCAAGGTGTGCTAAAGCAATTGGACTCTGATGATCTTCTGCCGCTACTACCTGATATGAGTCCTTCTTTCTGTCATGATATAATTTTATCGAGTTGGCGAGATCAATTGAGTAATAATGGTTCAAACCCTTCCTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCTGCCTTGGTTTATTGAAGGTGATAAATGATGGTATTGGTTTTGCGGGGCCATTGCTTCTCAATAAGCTGATCAAGTTTCTTCAGCAAGGTTCAGCAAGTTGGGATGGGTATTTACTTGCATTATCCTTGGGTATCACATCAATAGTTAAATCTTTTCTAGATACACAGTATACTTTTCGTCTTTCCAAACTGAAGCTAAAGTTGCGATCTAGTATCATGACCCTAATCTATGAGAAGTGTCTATATGTGAACCTAGCAGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTTATGTCGGTGGATGCTGATCGAACTGTCAACTTGTGTACTAGTTTCCATGATATTTGGAGTCTGCCTTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTCGCATTTGTGTCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCAAAATTGATTGCAAGGGCCACTGAGCAAATGATGAAGGAGAAGGATGAAAGGATTCGCAGGACCGGGGAACTATTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCAAGTTGGTTGATGGAGACAAGATCTTTAGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCATCACTATTTTCTCTTTGCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAACGGTTTTCACTTGTCTTGCTTTGTTTAACACTTTGATTTCACCACTTAATTCATTCCCTTGGGTGATTAATGGATTGATTGATTTCTTCATATCCTCCAGACGGTTGAGTAGGTTTCTCTCTTGCCCTGAACATAGACGCAAAGTGGGAGAGAACAGTTCCTGTTCTTCATCATTCCTGAGTAAACAGCCTGATTCTTTACAAGATATAGCTGTCTCTATGCAAGATGCATGCTGTTCTTGGTCAAGTAGTGATGAACAAGCATTAAATCCGGCATTGGATCATGTGACTCTTAGCCTATCCAAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATGCCTGTTATATTCAATTCTCGAAGAAATGCGGCTTGATCATGGATCTATTTATTCCAATGGATCTATAGCTTATGTACCACAGGTCCCTTGGATTATATCTGGAACAGTACGTGACAATATATTATTCGGGAAAAGCTATCATCCTGAAAGGTATGCAGATACAGTAAAGGCATGTGCATTGGATGTCGATATCTCATTGATGGTTGGTGGTGACATGGCTTATGTTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGTATTGTATCATGACTCAGATGTTATTATGCTTGACGACGTCCTGAGTGCAGTTGATGTACAAGTTGCTCGGTGGATCTTACACAATGCCATTCTTGGTCCTCTTATGAAGGGAAAAACCCGATTGCTTTGTACCCACAACACTCAGGCAATATCTTCTGCTGATATGATTGTTGTATTGGACAAAGGACACTTAAAGTGGATGGGAAGTTCAGCTGAATTTCCAACTTCTTCATATACAGCATTCTCCCCATTGAATGAAATAGATTCAACTTCACATAATCAGAAATCTTGCAGCACAAATTCTTCTATATCCAAGGAGCAGTCTCTTCCTGATAGAATTATCATGGATTCTCTGGAGGGAGCAGAGGATGTAATTGAAGTTGAGTTGAGGAAGGAGGGAAAAGTTGAACTCAGAGTGTATAAGAACTATGCTGCTTTTACTGGTTGGTTCATTGCCGTTATTATATGTCTATCAGCTATTCTGATGCAAGCTTCGCGTAATGGAAATGATTTATGGCTTTCATATTGGGTGGATACCACAACGGAAGACGGTCAAACAAGCTACTCTATGTCTTTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCCTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCGGCAACTAAGGTACACAATAGACTTCTCAGCAAACTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCTGGCGGGAGAATACTGAATAGGTTATCTTCAGATCTTTATACAATAGATGATTCTCTTCCATTTATTATGAACATTCTCCTGGCTAATTTTGTAGGACTGTTGGGTATTGCAATTATTTTATCTTACGTACAGGTCTTGTTCTTAGTTCTGTTATTGCCCTTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCGAGAGAATTGCGAAGACTGGACAGTGTTTCTCGCTCTCCAATATATACATCTTTCACCGAAACACTTGATGGATCATCAACTATTAGAGCCTTTAAATCCGAGGACTTCTTCTTCGCCAAATTTACTGACTACGTAACATTATATCAGAAGACTTCCTATACAGAGATGGTGGCAAGTCTGTGGCTTTCCCTGCGTCTTCAGTTATTAGCTGCATTTATCATCTCATTCATAGCCCTGATGGCTGTTGTTGGTTCTCATGACAGTCTGCCTATCAACTTTGGCACCCCAGGACTGGTTGGATTGGCCCTCTCGTACGCAGCTCCAATTGTGTCTCTGCTGGGGAGTTTTCTAACAAGTTTCACCGAAACAGAAAAGGAAATGGTTTCAATTGAAAGAGCCCTTCAATACATGGATATTCCCCAAGAAGAACAAGCTGGATGTCTAAACTTGAATCCAGATTGGCCAAATCAAGGGGTTATTGAATTCCAACAAGTTACTTTGAAATATATGCCATCTTTACCAGCTTCACTCTGCAATCTTAGTTTTAAAATTGAAGGAGGGACACAGGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCACTTTTTCGTCTTACCCCAATATGTGCAGGCTCCATCACAGTTGATGGCATGGACATTCGAAATATTCCTGTGAGAGAACTACGAACACATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCATTAAGGGATAACCTAGATCCATTCAAAAGGAACGATGACTCAAAAATTTGGGATGCACTGGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGTAGCTGGTGGGCTGGATATTCTTGTAAAGGAAGGAGGGATGTCATTTTCAGTTGGCCAGCGGCAGCTTCTTTGCCTTGCACGTGCACTTCTCAAATCTTCAAAGGTTCTTTGTTTGGATGAATGCACTGCCAGTGTCGACATTCAAACTGCTTCACTGCTGCAAAGCACAATATCCAGTGAATGCAAAGGAATGACGGTGGTCACAATTGCTCACCGGATTTCAACTGTCATAAATATGGATAACATTCTAATTCTTGATCATGGGAACATGGCTGAACAAGGAAATCCACAGATTCTTCTGAAAGATGGCACCTCTATATTTGCTAGTTTTGTTAAAGCGTCATCCATGTAA 4410 0.3995 MDDFFALICPNSPFVWDGKGFSECFEDIVLGFAVNIVTIVMIVVLGIKQKIGGRNAQRSFTQKTLPEKFVLDFVPAIGACFSVLEIIFLLKKENDGHFIGYQKWLYSCCSELFVWANVILFTKCASSSHSIVFNRVLCFWWILKPILGILHLITKFPSLEVSVCIMESLVVLLNVSFGIVINVIRIKRSSSKSSLLEDPLLSNGGDLEEGGNHDLGNHSTFLDFMTFKFISPVMNQGVLKQLDSDDLLPLLPDMSPSFCHDIILSSWRDQLSNNGSNPSLFRALCSAYGWPYLCLGLLKVINDGIGFAGPLLLNKLIKFLQQGSASWDGYLLALSLGITSIVKSFLDTQYTFRLSKLKLKLRSSIMTLIYEKCLYVNLAERSKFTNGEIQTFMSVDADRTVNLCTSFHDIWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISKLIARATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPSLFSLCTFGLFALMGHQLDAATVFTCLALFNTLISPLNSFPWVINGLIDFFISSRRLSRFLSCPEHRRKVGENSSCSSSFLSKQPDSLQDIAVSMQDACCSWSSSDEQALNPALDHVTLSLSKGSFVAVIGEVGSGKSCLLYSILEEMRLDHGSIYSNGSIAYVPQVPWIISGTVRDNILFGKSYHPERYADTVKACALDVDISLMVGGDMAYVGEKGVNLSGGQRARLALARVLYHDSDVIMLDDVLSAVDVQVARWILHNAILGPLMKGKTRLLCTHNTQAISSADMIVVLDKGHLKWMGSSAEFPTSSYTAFSPLNEIDSTSHNQKSCSTNSSISKEQSLPDRIIMDSLEGAEDVIEVELRKEGKVELRVYKNYAAFTGWFIAVIICLSAILMQASRNGNDLWLSYWVDTTTEDGQTSYSMSFYLAILCLFCIMNSLFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVLFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFAKFTDYVTLYQKTSYTEMVASLWLSLRLQLLAAFIISFIALMAVVGSHDSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSIERALQYMDIPQEEQAGCLNLNPDWPNQGVIEFQQVTLKYMPSLPASLCNLSFKIEGGTQVGIIGRTGAGKSSVLNALFRLTPICAGSITVDGMDIRNIPVRELRTHLAIVPQSPFLFEGSLRDNLDPFKRNDDSKIWDALEKCHVKEEVEVAGGLDILVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTASVDIQTASLLQSTISSECKGMTVVTIAHRISTVINMDNILILDHGNMAEQGNPQILLKDGTSIFASFVKASSM 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04841 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 297 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g04841 1469 SUPERFAMILY ABC transporter transmembrane region 281 757 IPR036640 GO:0005524|GO:0016020
Trre12g04841 1469 ProSitePatterns ABC transporters family signature. 1368 1382 IPR017871 GO:0005524|GO:0016887
Trre12g04841 1469 CDD ABCC_MRP_domain1 616 819 - -
Trre12g04841 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 616 843 IPR003439 GO:0005524
Trre12g04841 1469 FunFam ABC transporter C family member 5 874 1215 - -
Trre12g04841 1469 FunFam ATP-binding cassette (ABC) transporter, putative 1218 1466 - -
Trre12g04841 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 831 IPR027417 -
Trre12g04841 1469 FunFam ATP-binding cassette subfamily C member 10 272 589 - -
Trre12g04841 1469 Gene3D - 1217 1467 IPR027417 -
Trre12g04841 1469 SUPERFAMILY ABC transporter transmembrane region 906 1214 IPR036640 GO:0005524|GO:0016020
Trre12g04841 1469 Gene3D - 591 865 IPR027417 -
Trre12g04841 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1456 IPR027417 -
Trre12g04841 1469 CDD ABC_6TM_MRP7_D1_like 295 580 - -
Trre12g04841 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 910 1197 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g04841 1469 Pfam ABC transporter 637 769 IPR003439 GO:0005524
Trre12g04841 1469 CDD ABCC_MRP_domain2 1230 1449 - -
Trre12g04841 1469 CDD ABC_6TM_MRP7_D2_like 909 1209 - -
Trre12g04841 1469 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 218 1467 - -
Trre12g04841 1469 FunFam ABC transporter C family member 13 598 853 - -
Trre12g04841 1469 Pfam ABC transporter transmembrane region 911 1160 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g04841 1469 Pfam ABC transporter transmembrane region 294 560 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre12g04841 1469 Pfam ABC transporter 1250 1396 IPR003439 GO:0005524
Trre12g04841 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1465 IPR003439 GO:0005524
Trre12g04841 1469 Gene3D ABC transporter type 1, transmembrane domain 281 588 IPR036640 GO:0005524|GO:0016020
Trre12g04841 1469 Gene3D ABC transporter type 1, transmembrane domain 877 1216 IPR036640 GO:0005524|GO:0016020
Trre12g04841 1469 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524|GO:0016887
Trre12g04841 1469 SMART AAA_5 646 820 IPR003593 GO:0016887
Trre12g04841 1469 SMART AAA_5 1258 1442 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04841 Trre-Chr12 61859174 61872953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04841 637 870 Calmodulin-binding Proteins AT2G36910 27.059 2.31e-18 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04841 K05674 - gmx:100814181 2406.71