Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04835 ATGGATTTTTCATCATCATGGATTAACACTTCCTTGGATCTCAACATTAATTCCCACAGGGTTCATCAACAACTTCCCAAAAATGTGGTGGAAAACAATTTTTTCTCGTTGGAGATGAAGAAATCTTCTCCAAAAGAAGAGTCAAGTGATGCTTTGGTAGAGGAGCTGAAACGCGTGAGTGCAGAAAACAAGAAGTTGACAGGAATGTTGACAGAGATGTGTGAGAATTACAACACATTGAGAAACAACTTGATGGAATATATGAGGAAGAATCCTGATAAAGATCAGTCAAGTCCATCAAAGAAACGAAAGTCTGATGAAATAAGTAGCAGTAACAATAATCTAATGGGAGGAGAAGTAGGAGTTAATGGAAACAACTCTGAGAGCAGTTCTAGTGATGAAGATCAATCATGCAAGAAAACAATGGAATTAGAAACCTGCATTAAGGCTAAAGTTTCAAGAGTTTATTACAAACAAGAATCATCTGATTCAAGCCTTATTGTGAAAGATGGATATCAGTGGAGAAAATATGGACAAAAGGTGACAAGGGATAATCCTTCTCCAAGAGCATACTTCAAATGTTCATTTGCTCCAAGCTGCACAGTGAAGAAGAAAGTGCAGAGAAGTGTGGAAGATCCATCAGTAGTGGTTGCAACATATGAAGGAGAGCATAATCATCCTCATCCTTCTCAAATGGAATCAACATCATCAGGCGCAAACAATCGTTGTAGGAATCCGATAAGTTCAGCAGTGCCTTCTTCTGCACCAACTCCAAGTACAGTTACCGTTGATTGGACAAAATCTAAGTGCAGCAATGAACCTTCTTCTAAGAAAATGATGATAAATAATCCCAAAATGGAAGTACCTCAGATTTTGGTGGAACAAATGGCTACTTCATTGACCAAGGATCTTAACTTCAGAGCAGCACTAGCTGCTGCTATATCAGGAAAAATGTTGCATCAGAATTAA 969 0.3818 MDFSSSWINTSLDLNINSHRVHQQLPKNVVENNFFSLEMKKSSPKEESSDALVEELKRVSAENKKLTGMLTEMCENYNTLRNNLMEYMRKNPDKDQSSPSKKRKSDEISSSNNNLMGGEVGVNGNNSESSSSDEDQSCKKTMELETCIKAKVSRVYYKQESSDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCTVKKKVQRSVEDPSVVVATYEGEHNHPHPSQMESTSSGANNRCRNPISSAVPSSAPTPSTVTVDWTKSKCSNEPSSKKMMINNPKMEVPQILVEQMATSLTKDLNFRAALAAAISGKMLHQN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04835 322 FunFam WRKY transcription factor 40 153 230 - -
Trre12g04835 322 MobiDBLite consensus disorder prediction 222 241 - -
Trre12g04835 322 Pfam WRKY DNA -binding domain 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g04835 322 MobiDBLite consensus disorder prediction 90 138 - -
Trre12g04835 322 SUPERFAMILY WRKY DNA-binding domain 166 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g04835 322 MobiDBLite consensus disorder prediction 247 279 - -
Trre12g04835 322 Gene3D WRKY domain 151 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g04835 322 MobiDBLite consensus disorder prediction 109 132 - -
Trre12g04835 322 ProSiteProfiles WRKY domain profile. 163 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g04835 322 SMART WRKY_cls 168 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g04835 322 MobiDBLite consensus disorder prediction 90 108 - -
Trre12g04835 322 MobiDBLite consensus disorder prediction 247 280 - -
Trre12g04835 322 Coils Coil 70 90 - -
Trre12g04835 322 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 318 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04835 Trre-Chr12 61839299 61840671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04835 1 322 WRKY Transcription Factor Family AT1G80840 54.217 4.22e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre12g04835 WRKY 3.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04835 - - gmx:100798375 386.726