Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04834 ATGTCTAAAAAACCTGTCACCGTATCAACTTCAGCCTTCATATTTAAGCTAACAATAAATTCTGGAGGGGTTGCTTCCTTTGCCCTTTTCAATGTCCATGGGAGTGATGATGCATCTCTAAAAGAAGCAGCAGCTGTCATAAAGTTATCTTCATCGAGAATGGCAACACAGTCCGAATGTCTCGGATATGAATTTGCCAAGTGGTTGGGAGTCCAAACGCCACAGGCTAGAGTCATTCACAATACCAGTTCAGAATGGCTCCAAATAAAAGAAGCTGCAGAAAAAGCAAGGGATGCAGCAAGTTTTGAGCGTGATGCAATTGGTGAAACAACATGTTCAGAGCTTTTGGAAGCACTTGAGCTTAGTCGGTGTCTCTTGTTTATGAGAATGGATGAGATGATGCGTGGTCAAAGAGGATGGAGGGATTTATCAATCTTGGGAGATAAAATGAACATGTTTAGTGGGATGATAGAAGGGTTGATTTGGTCTCCACAAAGCAACAATGGTATTAGCCGAGCTGATGATTGGGCTTTTGAGGAGGTCGAAGTGCGAAAGATAATTTATTGTTCAGTGTTCACTGAAGTGACTGAGGGTATGAATTCTTATGGTGTTACTCGGCATCCCCATGGTTTGGACAAACTCACATGA 648 0.4228 MSKKPVTVSTSAFIFKLTINSGGVASFALFNVHGSDDASLKEAAAVIKLSSSRMATQSECLGYEFAKWLGVQTPQARVIHNTSSEWLQIKEAAEKARDAASFERDAIGETTCSELLEALELSRCLLFMRMDEMMRGQRGWRDLSILGDKMNMFSGMIEGLIWSPQSNNGISRADDWAFEEVEVRKIIYCSVFTEVTEGMNSYGVTRHPHGLDKLT 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04834 215 Pfam Actin-fragmin kinase, catalytic 25 147 IPR015275 -
Trre12g04834 215 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 15 129 IPR035010 GO:0004721|GO:0009737|GO:0043622
Trre12g04834 215 SUPERFAMILY Protein kinase-like (PK-like) 13 130 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04834 Trre-Chr12 61820147 61823120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04834 15 128 Protein tyrosine phosphatase (PTP) family AT5G23720 70.175 5.17e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04834 K14165 - jre:109000311 166.007