Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04832 ATGGATCGCAACACCAACAACAACAACAAAAGGAACATTCTGTTCAACAAGTACGAGATAGGTAAAATTCTAGGACAGGGTAATTTCGCCAAAGTTTACCATGGTAGAAACATAGCCACAAACGAAAACGTGGCTATAAAAGTGATTAAAAAAGAAAAGCTGAAAAAAGAGAGGCTGATGAAACAAATCAAACGTGAAGTTTCCGTGATGCGTCTCGTTCGTCATCCACATATTGTTGAATTGAAAGAGGTGATGGCAAACAAAGCTAAAGTTTTCATGGTTGTTGAATATGTCAAAGGAGGTGAACTCTTTGCAAAAGTAGCAAAAGGTAAAATGGAAGAACATGTTGCTAGAAAATATTTTCAACAATTAATCAGTGCTGTTGATTTCTGTCATAGTCGTGGTGTTACACACCGTGATCTCAAACCTGAGAATCTTCTTTTGGATGAAAATGAAGATCTTAAGGTTAGTGATTTTGGTTTATCTGCTTTGCCGGATCAACGAAGATCCGACGGTATGCTTCTCACACCGTGTGGGACTCCGGCCTACGTTGCGCCGGAGGTTTTAAAGAAGATAGGCTATGATGGATCTAAAGCTGATATTTGGTCCTGTGGTGTTATTCTTTTTGCTTTGCTTTCTGGTTATTTACCCTTTCAAGGTGAAAATGTCATGAGAATTTATAGCAAATCTTTTAAAGCTGATTATGCTTTACCTGAATGGATCTCACCAGGAGCTAAGAAATTGATATCTAATTTGCTTTGTGTTGATCCTGAAAAGAGATTTTCTATACCTGATATCATGAAAGATCCTTGGTTTCAAATTGGGTTTATGAGACCTATTGCTTTCTCAATGAAAGAATCTGCTGTGGATGATAACATTGATTTCAGTGGAGATGATGAAGGACACAATGATGGACACAATGTTGAGCTTGTCGATGGAATTAGAACAAAACCTAATCATTCCCGTCGTCCATCTTACAATGCATTCGAGATCATTTCATCGCTTTCGCACGGATTTGATTTAAGGAACTTGTTTGAAACAAGGAAGAGATCGCCGTCCATGTTTATATCGAAAAATTCTGCTTCGGCGGTGGTGGGGAAGTTAGAGAATGTTGCAAAGGATCTGAATTTGAGAGTAACTGGGAAGAAAGATTTCATGGTGAAAATGCAGGGGGCGACAGAGGGGAGGAAAGGGAAATTGGGTATGACGGTGGAGGTGTTTGAGGTGGCACCTGAGGTGGCTGTGGTTGAGTTTTCTAAGTCTGCAGGAGATACACTTGAGTATGTTAAGTTCTGTGAAGAAGAAGTTAGACCTTCTCTCAAAGACATTGTCTGGAGCTGGCAGGTTGTGTTGCTATTTGTTCTAATTCATTTGCATTTTATATCAAGTGTGGAGTTAAGGACATAA 1407 0.393 MDRNTNNNNKRNILFNKYEIGKILGQGNFAKVYHGRNIATNENVAIKVIKKEKLKKERLMKQIKREVSVMRLVRHPHIVELKEVMANKAKVFMVVEYVKGGELFAKVAKGKMEEHVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKIGYDGSKADIWSCGVILFALLSGYLPFQGENVMRIYSKSFKADYALPEWISPGAKKLISNLLCVDPEKRFSIPDIMKDPWFQIGFMRPIAFSMKESAVDDNIDFSGDDEGHNDGHNVELVDGIRTKPNHSRRPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKNSASAVVGKLENVAKDLNLRVTGKKDFMVKMQGATEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYVKFCEEEVRPSLKDIVWSWQVVLLFVLIHLHFISSVELRT 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04832 468 ProSiteProfiles NAF domain profile. 321 346 IPR018451 GO:0007165
Trre12g04832 468 Gene3D Kinase associated domain 1, KA1 326 446 - -
Trre12g04832 468 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 441 - -
Trre12g04832 468 SUPERFAMILY Protein kinase-like (PK-like) 14 273 IPR011009 -
Trre12g04832 468 CDD CIPK_C 327 441 - -
Trre12g04832 468 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04832 468 FunFam Non-specific serine/threonine protein kinase 321 445 - -
Trre12g04832 468 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04832 468 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04832 468 FunFam Non-specific serine/threonine protein kinase 11 310 - -
Trre12g04832 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Trre12g04832 468 Gene3D Transferase(Phosphotransferase) domain 1 8 325 - -
Trre12g04832 468 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Trre12g04832 468 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Trre12g04832 468 Coils Coil 46 66 - -
Trre12g04832 468 Pfam NAF domain 325 380 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04832 Trre-Chr12 61799805 61801504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04832 10 448 CBL-interacting serine-threonine protein kinases AT5G10930 60.227 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre12g04832 Pkinase 4.3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04832 - - gmx:100804244 722.235