Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04830 ATGGCTGTCTCAGGTTCTTCTGGTTCTGGGCAGCCACAATTCATTTCAAGCACTGGAAACCAAAACTCCTCCAATGCGCCGCTCATTGACAGTGACACCACAAATACTGATCAAATTGTTGTCCCTGATAGGACAAGCTGGAAAAACTTATTTGCATATATGGGGCCTGGATTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTTTGAGACGGATCTACAATCTGGGGCACAATATAGATATGAGTTACTTTGGATCATATTGGTGGCATCTTGTGCTGCTCTTGTAATTCAATCGATGGCAGCTAATCTTGGGGTGGTCACTGGAAAGCACTTAGCAGAGCATTGTAGAGCTGAATATTCGCGGGTGTCCAACTTTATTCTTTGGATTATTGCTGAAATTGCCATAGTGGCCTGTGACATCCCAGAAGTGATCGGGACAGCCTTTGCGTTAAATATGCTCTTCAACATACCTGTTTGGATTGGTGTGCTACTGACCGGACTCAGCACATTGATGCTCTTAGCATTACAACAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTTGTGTTTACTATTGCTGCGTGTTTTTGGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTGTGAAGGGTCTTTTTGTGCCACAACTAAAAGGGAGTGGTGCTACTGGCCTTGCAATTTCACTCCTCGGTGCTATGGTTATGCCGCACAATCTCTTCCTGCACTCGGCACTGGTACTCTCTAGGAAAATACCACGATCCGTTCGCGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCTTTCCTCATTAATGTTTCTGTCATTTCTGTAAGTGGCGCTGTTTGCAGTTCTTCAAATTTGAATGAAGAAGATCAGATGAGCTGTCAGGATTTAGATCTCAACAAAGCTTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAGTTGCTTTACTTGCATCAGGTCAAAGTTCTACGATAACAGGAACCTATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGATTGACGCCATGGATTCGGAATATGTTAACCCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCGGTCATTGGTGGCTCTACTGGGGCTGGGAAGCTCATAATAATTGCATCTATGATCTTATCATTTGAGCTTCCCTTTGCTTTGGTACCACTCCTCAAGTTCACCAGTAGCAAAACCAAGATGGGGGCACATGTGAACTCTACCATGATATCTGCCGTTACGTGGATAATCGGTTCACTTATTATGGTTATTAATATATACTACTTAGTGAATGGTTTCATCAAGCTTCTTCTTCATAGTGATATAGAAATTGTGGCAAAGGTGTTTCTTGGGATATTAGGATTTTCAGGCATGGCAGTATATTTGGCTGGTATAGCTTATCTTGTACTTCGCAAAAATAAAGAGGGTACACATCTTTTGGCTCTAACAGCACCTGAAAATCAGCAAATGGCAAATGAACAAGTAAATGGGTCAATCTATTGTCTTCCAAGAGAAGACATAGTAAACATGCAATTGCCTCAGAGAAGTAGTCCTGCAGATCTTGACTGA 1644 0.4209 MAVSGSSGSGQPQFISSTGNQNSSNAPLIDSDTTNTDQIVVPDRTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYRYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRAEYSRVSNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLMLLALQQYGVRKLEFLIAFLVFTIAACFWAELGYAKPDAKEVVKGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINVSVISVSGAVCSSSNLNEEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGVALLASGQSSTITGTYAGQYVMQGFLDLRLTPWIRNMLTRCLAIVPSLIVAVIGGSTGAGKLIIIASMILSFELPFALVPLLKFTSSKTKMGAHVNSTMISAVTWIIGSLIMVINIYYLVNGFIKLLLHSDIEIVAKVFLGILGFSGMAVYLAGIAYLVLRKNKEGTHLLALTAPENQQMANEQVNGSIYCLPREDIVNMQLPQRSSPADLD 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04830 547 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 PRINTS Natural resistance-associated macrophage protein signature 402 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 PRINTS Natural resistance-associated macrophage protein signature 232 255 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 PRINTS Natural resistance-associated macrophage protein signature 129 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 NCBIfam Nramp family divalent metal transporter 55 423 - -
Trre12g04830 547 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 Hamap Divalent metal cation transporter MntH [mntH]. 42 458 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 MobiDBLite consensus disorder prediction 1 33 - -
Trre12g04830 547 Pfam Natural resistance-associated macrophage protein 70 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre12g04830 547 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 25 501 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04830 Trre-Chr12 61774031 61778244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04830 16 540 Inorganic Solute Cotransporters AT1G15960 79.507 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04830 K21398 - gmx:100797298 951.044