Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04827 ATGCCTTCCGCTGTCGCCGCCGATGAATCTTCACCACTTTCCGGCCAAACCATATGTGTCACCGGTGCTGGAGGCTTCATCGCTTCTTGGATGGTTAAACTCCTCTTAGAGAAAGGCTACACTGTCAGAGGAACTTTGAGGAATCCAGATGATCCCAAAAATGGGCACTTGAAAGAATTGGAAGGAGCAAAGGAAAGGTTAACTCTTGTCAAAGTTGATCTCCTTGATCTTAACTCCGTTAAACAAGCTGTTAACGGATGTCATGGTGTCTTCCATACTGCTTCCCCCGTTACAGATAACCCCGAAGAAATGGTGGAGCCTGCAGTGAATGGAGCAAAGAATGTGATCATAGCGGCTGCCGAAGCAAATGTGCGGCGCGTGGTTTTCACTTCATCAATTGGAGCTGTCTATATGGACCCTAAGAGGAGTGTTGATGTTGAAGTTGACGAGTCTTGTTGGAGTGATTTGGAGTTTTGCAAGAACACCAAGAATTGGTATTGCTATGGGAAAGCAGTGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAGAAAGGGGTTGATTTGGTTGTAGTGAATCCAGTTTTGGTTCTTGGACCATTGCTACAACCCACAATCAATGCAAGCACAATTCACATTCTAAAGTACCTAACTGGATCAGCTAAGACCTATGCAAATGCAACACAAGCTTATGTTCATGTTAGGGATGTGGCATTAGCTCACATACTTGTTTATGAGAAACCTTCTGCTTCTGGTAGATACTTGTGTGCTGAAAGTTCATTGCACCGTGGGGAGCTTGTTGAAATTCTTGCCAAGTACTTCCCAGAGTACCCCATTCCTACCAAGTGTTCAGATGAAAAGAATCCTCGAGTGAAACCGCATATCTTCTCAAATAAAAAACTGAAAGATTTGGGATTAGAATTCACTCCAGTGAGTCAATGTTTATATGAAACTGTTAAGAGCCTGCAAGAGCAAGGTCATCTTTCTGTTCCAAAGAAAGAAGATTAA 1005 0.4358 MPSAVAADESSPLSGQTICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKELEGAKERLTLVKVDLLDLNSVKQAVNGCHGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEANVRRVVFTSSIGAVYMDPKRSVDVEVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFTPVSQCLYETVKSLQEQGHLSVPKKED 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04827 334 CDD FR_SDR_e 19 305 - -
Trre12g04827 334 Pfam NAD dependent epimerase/dehydratase family 18 249 IPR001509 -
Trre12g04827 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 322 IPR036291 -
Trre12g04827 334 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 17 318 - -
Trre12g04827 334 Gene3D - 7 334 - -
Trre12g04827 334 FunFam Cinnamoyl-CoA reductase 1 9 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04827 Trre-Chr12 61730064 61734951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04827 13 281 Monolignol Biosynthesis Gene Families AT1G80820 74.721 2.81e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04827 K09753 - gmx:100789070 587.03