Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04826 ATGGAGCATATTAATAATGAGGAAATTCCATCAGCACCAGCAACACCAGGCACTCCTGGTGTACCTCTGTTTGGTGGTTTTAAGTCAGAGAGAAGTGGGAACGGTAGTAATAAGTATAAGAAGTCCCTCCTTAAGAATTGTAAATGTTTTGGTGTCCAAGAATGGACCTTAGAAGATGGAGCTCTACCCACCGTCACTTGTTCATTAATGCCACCCCCTCCTCCTGTTCCTCTCGCAAAAAAGATAGGAGCTGAGTTTATAGGGACATTGATTCTGATGTTTGCTGGGACAGCCACTGCTATTGTGAACCAAAAGACAAATGGCTCGGAGACTCTGATCGGATGTGCTACCTCTACTGGTCTTGCCGTTATGATCATCATCCTCTCCACCGGCCACATCTCCGGTGCTCATCTCAACCCTGCAGTCACCATTTCATTTGCTGCATTAAAGCACTTCCCGTGGAAGCATGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCAATATGTGCTGCATATGCTCTCAAAGGGGTTTTTCACCCTTTCATGAGTGGAGGAGTCACTGTTCCTTCCGGAGGATATGGCCAAGCTTTTGCTTTAGAGTTCATTATCAGTTTTAATCTCATGTTCGTTGTCACGGCAGTGGCCACCGACACAAGAGCTGTAGGGGAACTAGCAGGGATTGCGGTGGGAGCAACTGTGATGCTCAATATACTCATAGCAGGGCCAATAACAGGAGGGTCAATGAACCCGGTAAGAACTCTAGGTCCAGCTATTGCTGCAAACAACTACAAAGCCATATGGGTCTATCTATTAGCTCCAGTACTTGGAGCTCTAGGTGGGGCAGGTACATATACTGCAGTCAAGCTGCCCGAAGAAGATGATAACGCAAAGACTAATGCTTCTGCAAACCACCCCAGCTTCAGAAGATGA 933 0.4652 MEHINNEEIPSAPATPGTPGVPLFGGFKSERSGNGSNKYKKSLLKNCKCFGVQEWTLEDGALPTVTCSLMPPPPPVPLAKKIGAEFIGTLILMFAGTATAIVNQKTNGSETLIGCATSTGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVLASICAAYALKGVFHPFMSGGVTVPSGGYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPITGGSMNPVRTLGPAIAANNYKAIWVYLLAPVLGALGGAGTYTAVKLPEEDDNAKTNASANHPSFRR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04826 310 ProSitePatterns MIP family signature. 137 145 IPR022357 -
Trre12g04826 310 FunFam Aquaporin NIP2-1 68 300 - -
Trre12g04826 310 Pfam Major intrinsic protein 78 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04826 310 CDD MIP 80 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04826 310 PANTHER AQUAPORIN NIP2-1 44 294 IPR034294 -
Trre12g04826 310 PRINTS Major intrinsic protein family signature 200 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04826 310 PRINTS Major intrinsic protein family signature 231 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04826 310 PRINTS Major intrinsic protein family signature 80 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04826 310 PRINTS Major intrinsic protein family signature 156 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04826 310 PRINTS Major intrinsic protein family signature 119 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04826 310 PRINTS Major intrinsic protein family signature 268 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04826 310 MobiDBLite consensus disorder prediction 1 29 - -
Trre12g04826 310 Gene3D Glycerol uptake facilitator protein. 75 302 IPR023271 -
Trre12g04826 310 SUPERFAMILY Aquaporin-like 77 297 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04826 Trre-Chr12 61717227 61719078 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04826 4 310 Major Intrinsic Protein MIP AT1G80760 76.282 4.38e-166 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04826 K09874 - gmx:100815637 499.975