Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04825 ATGAAATCAAACAAGGGAGATTCCTTGAGGATGAGAGCGAGAGCGATATGTTTTGGATCTGAAGAGAGAAAGAGCGAAGGAAGCGATGAAGACGCCGATGATATCAGCGATGGCGTCTCTAAAGGAAGCGCCGGAAGAGCGGAAAAAGCCGAGGTGATCGGCGACTTCTTTGGCGGCGCCGACGAGGAGAGAAATGATGGATGCCATGGAAATGGCGTGGCGGCGGAGGAAATGGCCAATATCATCCTAATACAATTGGTTGGAGAAATGGAGCATAATATTGATAATGAGAGAGTACAAGAGAGAAGTGGGAATGGTAGTAAAAAGCATAAGAAGTCTCTCCTTGATAATTATACATGCTTCGGTGGTGACCAACAATGGTCCATTAAAGATGGTGCTCAACCCACCGTCACTTGTTCATTAATGCCACCCCCTCCTCCTATTCCTCTTGCAAAAAAGATAGGAGCTGAGTTTATAGGGACATTTATTCTCATGTTTGCTGGGACAGCCACTGCTATTGTCAACCAAAAGACAGATGGTTCCGAGACTCTGATTGGATGTGCTGCCTCTAGTGGTCTTGGTGTTATGATCATCATTCTCGCCACCGGCCACATTTCCGGTGCTCATCTCAACCCTGCAGTCACCATTTCCTTTGCTGCATTAAAGCACTTCCCCTGGAAGAATGTGCCTGTGTATATTGGTGCACAAGTTTTGGCATCAATATGTGCTGCATTTGCTCTCAAAAAGATTTTTCACCCTTTCATGAGTGGTGGAGTCACCGTTCCTTCTGCAGGATATGGATATGGCCAAGTTTTTGCTTTAGAGTTCATTATAAGCTTTATTCTCATGTTTGTTGTTACTGCAGTGGCCACCGACACAAGAGCTGTAGGAGAACTAGCAGGGATTGCGGTGGGAGCAACTGTGATGCTCAATATACTCATAGCAGGGCCAATAACAGGAGCGTCAATGAACCCAGTAAGAACTCTAGGTCCAGCTATTGCTACAAACAACTACGAAGCCATATGGGTCTATCTATCAGCTCCCATACTTGGAGCTCTAGTTGGGGCAGGTACCTATACTGCAGTCAAGCTGCCAGAAGAAGATGATGATATTGCAAAGACTAATATTTTTTCAAACCATCCTAGCTTCAGATGA 1155 0.4545 MKSNKGDSLRMRARAICFGSEERKSEGSDEDADDISDGVSKGSAGRAEKAEVIGDFFGGADEERNDGCHGNGVAAEEMANIILIQLVGEMEHNIDNERVQERSGNGSKKHKKSLLDNYTCFGGDQQWSIKDGAQPTVTCSLMPPPPPIPLAKKIGAEFIGTFILMFAGTATAIVNQKTDGSETLIGCAASSGLGVMIIILATGHISGAHLNPAVTISFAALKHFPWKNVPVYIGAQVLASICAAFALKKIFHPFMSGGVTVPSAGYGYGQVFALEFIISFILMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPITGASMNPVRTLGPAIATNNYEAIWVYLSAPILGALVGAGTYTAVKLPEEDDDIAKTNIFSNHPSFR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04825 384 CDD MIP 152 359 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04825 384 SUPERFAMILY Aquaporin-like 149 367 IPR023271 -
Trre12g04825 384 PANTHER AQUAPORIN NIP2-1 130 374 IPR034294 -
Trre12g04825 384 ProSitePatterns MIP family signature. 209 217 IPR022357 -
Trre12g04825 384 Gene3D Glycerol uptake facilitator protein. 147 372 IPR023271 -
Trre12g04825 384 MobiDBLite consensus disorder prediction 16 46 - -
Trre12g04825 384 Pfam Major intrinsic protein 151 359 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04825 384 MobiDBLite consensus disorder prediction 16 37 - -
Trre12g04825 384 FunFam Aquaporin NIP2-1 140 374 - -
Trre12g04825 384 PRINTS Major intrinsic protein family signature 274 292 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04825 384 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04825 384 PRINTS Major intrinsic protein family signature 228 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04825 384 PRINTS Major intrinsic protein family signature 305 327 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04825 384 PRINTS Major intrinsic protein family signature 191 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g04825 384 PRINTS Major intrinsic protein family signature 342 362 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04825 Trre-Chr12 61712912 61716807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04825 101 369 Major Intrinsic Protein MIP AT1G80760 76.208 9.00e-145 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04825 K09874 - gmx:100815637 417.542