Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04823 ATGGATCTTCTAAGATCAGAGCCATGTTCATCTCATAATTTGAACATCTTTTCTGATAAGAGACAGACAGAAAATGAAGAGAAAAAACATCTTCTACTGGATTTAAGTCTACCTAGTAACTATTCAGGTGATGATGATTCAAAGCAAGAACTCAATCTCATAAACTGTTTTGATACAGAAACGTCGATGAACTCGTCCTCAGAATCTAATCATGGTAATGAATTAGAGCCTAGGATTTTCTCATGCAACTACTGTCAAAGAAAGTTTTATAGTTCACAGGCACTTGGTGGACACCAAAATGCACACAAGAGAGAAAGAACTATGGCAAAAAGAGGACACAAAGCTGCGGTTTCGCTAGATTTTGAACACAGGTACTCAAGTATGGCTTCTCTACCTCTGCATGGATCCTATAACAGATCATCATCATCATCACCACTTGGAATTCAGGTGCATTCTTCTATGGTTCATAAACCTTCTTATCAAACACCGTTTTTCGGTTTGTCCCGTTCTCGTGCTCAAAACCAGTGGCAGAAACTACCTATGTATTCACAACCAGCAACTGGAAATCTTACATCAGAAACTGATGGATCATCTTTGGCTAATGGTATTCCTACAAGATCAGGTAAGTTTTCTCCAACAAAGGTGCAAGATGGATTAATTGGAGGTTACTGGTTGAATAATAGTGCTACTGCTACATGTTTCAAGACTAAACAAGAGGAGTTGCAGAAACTTGATTTGTCCCTCAAACTCTAA 753 0.3838 MDLLRSEPCSSHNLNIFSDKRQTENEEKKHLLLDLSLPSNYSGDDDSKQELNLINCFDTETSMNSSSESNHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTMAKRGHKAAVSLDFEHRYSSMASLPLHGSYNRSSSSSPLGIQVHSSMVHKPSYQTPFFGLSRSRAQNQWQKLPMYSQPATGNLTSETDGSSLANGIPTRSGKFSPTKVQDGLIGGYWLNNSATATCFKTKQEELQKLDLSLKL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04823 250 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 250 IPR044246 GO:0009788
Trre12g04823 250 MobiDBLite consensus disorder prediction 187 210 - -
Trre12g04823 250 FunFam Zinc finger protein 2 57 126 - -
Trre12g04823 250 SUPERFAMILY beta-beta-alpha zinc fingers 77 108 IPR036236 -
Trre12g04823 250 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Trre12g04823 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Trre12g04823 250 Gene3D Classic Zinc Finger 56 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04823 Trre-Chr12 61702976 61703728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04823 12 192 C2H2 Transcription Factor Family AT5G10970 42.935 1.91e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g04823 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04823 - - gmx:100812573 271.552