Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04817 ATGAATCTTGTTTTACTGTTCATTCCCATTTCTCTTTTCTCAACAATTCTTCATGCAAATGCACAACCTCAATCTCCAGGAAATCAGGAGGTTAGAGTAGTGCATCACCAGAGTTTGAATAAGAGAATTCTAGTAGCACTAATTGTTTGTTCCTCTCTTCTTGTTGGAATCTTCCTGTTCTTATTGTATTTCTTCTTCCGTCGACATAAAAACTTGAAAAGCTCCACTAGTAAAAGCCAAGGAACCATAGAGGCTGCAAAAGGGGAAAAGGAAACCTTAAGCTCTGTTAGTGCTAAACTTAACTACTCAAGAATGGCTGATAAGAAGAGTTCGATTGCTATTTTCGACTTTCAGTTGTTACAGACTGCGACAAACAACTTTTCAATGGATAATATTATGGGAGAGAGTGGTTCTAGAATTGTATATAGAGCTCGTTTTGATGAACATTTCCAGGCTGCTGTCAAGAAAGCAGACAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTTGTTGAGCAAAATTCGGCATCAGAATATCATAAAACTCCTAGGCTATTGTATTCATGGTGAATCGAGGTTTCTTGTTTATGAGTTCATGGAAAGCGGTTCTTTGGAAACTCAATTGCATGGAACTACTCGCGGTTCATCTTTAACTTGGTATATCCGGTTAAGAATTGCAATTGATGTTGCTAGAGCATTAGAATATCTCCATGAGCATTCCAATCCTCCTGTTGTTCATCGAGACTTAAAATCTTCCAATGTTCTTCTGGATTCTAATTTTAATGCTAAGCTATCAGATTTTGGACTCGCTGTAGCTTCTGGCATGCAACACAAGAACATGAAGATGTCGGGAACTTTGGGATATGTGGCACCCGAGTACATATCGCATGGTAAACTAACCGATAAGAGCGATGTTTATGCTTTTGGAGTTGTCCTTCTAGAACTTCTTACCGGAAGAAAACCAATGGAGAACATGTCCTCAGACCAATACCAATCTCTAGTTTCATGGGCCATGCCTCAACTAACTGACAGATCAAAACTTCCAAGTATTCTAGATCCTGTTATCCAAAATACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTGCTATGTGTGCAAGCAGAACCAAGTTATAGACCACTTATAACAGATGTTCTGCACTCTCTCATTCCTTTGGTACCCTTAGAGCTTGGAGGGTCACTCCGAGTTACAGAACCAATCAGCTCGTAA 1242 0.3937 MNLVLLFIPISLFSTILHANAQPQSPGNQEVRVVHHQSLNKRILVALIVCSSLLVGIFLFLLYFFFRRHKNLKSSTSKSQGTIEAAKGEKETLSSVSAKLNYSRMADKKSSIAIFDFQLLQTATNNFSMDNIMGESGSRIVYRARFDEHFQAAVKKADSDADREFENEVSLLSKIRHQNIIKLLGYCIHGESRFLVYEFMESGSLETQLHGTTRGSSLTWYIRLRIAIDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNFNAKLSDFGLAVASGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMSSDQYQSLVSWAMPQLTDRSKLPSILDPVIQNTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPLELGGSLRVTEPISS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04817 413 SUPERFAMILY Protein kinase-like (PK-like) 105 393 IPR011009 -
Trre12g04817 413 FunFam probable receptor-like protein kinase At1g80640 200 398 - -
Trre12g04817 413 Pfam Protein tyrosine and serine/threonine kinase 141 360 IPR001245 GO:0004672|GO:0006468
Trre12g04817 413 CDD STKc_IRAK 133 396 - -
Trre12g04817 413 PANTHER OS01G0750732 PROTEIN 19 395 - -
Trre12g04817 413 Gene3D Transferase(Phosphotransferase) domain 1 200 398 - -
Trre12g04817 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Trre12g04817 413 SMART serkin_6 127 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04817 413 ProSiteProfiles Protein kinase domain profile. 127 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04817 413 Gene3D Phosphorylase Kinase; domain 1 86 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04817 Trre-Chr12 61681129 61683985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04817 8 339 Receptor kinase-like Gene Family AT1G80640 47.478 2.29e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Trre12g04817 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04817 - - gmx:100811491 662.529