Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04812 ATGGAGCAGTCATGGGAGGAGGATATATGGCCTCTTCGTACGGAAATGGGTATTGAAAATTGGTTGGAGATGTGCCAAGAAGAAGACTACCTTGGTGACTACATATCTTTAGAAGCCCCAGCCTTGGCTGTGGCTGTGGCCGCGCCCGAGAATACACTACAAGAAATTTGCCATATATCAACGGTTGTTTCTAGTGAGATGATTGTATGCTCTAATAAGTCGCCGGAGCTGCTTCCTCCGTCCACTTCCTCTAGAACTTGCATTATCTCCTTTGATAACTCCGCGGTAACACCGTTAAAACCATCTGTGATATCGTCCAAACCACCGCGTCCGCCATGTTCAGCAAAAAAGAGGACTTCTGAGAAACTAAAGAGCTTGGAAGCAAAAGCAATTAACAAAGAAGGAGAAAATAAGATTATCAGGAGCGGATCTAAGGCTATACACACATTGGTAGAGAGGAAAAGGAGACTTGAACTCGCAAATAAGTTCATAGAGCTTTCAACTACAATTCCTAACTTGAAGAAGAAAGACAAAGCTTCAATAGTTATGGGGGCTATCAATCACGTGGAACAACTCCAAAAACGAGTGAAGGAGTTAGAAAAGCAAAACAAGAGAGGCAAAGAACCTACGAGTGAAAGGCTCCCTTATGTCAAAGCAAAGATGTTGGAGAAAAATATACTCATTTACATCAATTGTGAGAAACAAAATGGCATTGAACTCAAAATATTAGAAATGCTTGAAAATCTTCATTTGTTTGTCATCAGCACAAGCGTATTGCCATTTGGTAGTTCAACTCTTGGCATTACTATCATTGCCAAGATGGACGATGCATACAAAACAAGAATGGTAGATCTAATGGATAACGTAAGGCAATTGCTGCTGAATGGTTCTGCAAAACATCCAACATAA 909 0.4092 MEQSWEEDIWPLRTEMGIENWLEMCQEEDYLGDYISLEAPALAVAVAAPENTLQEICHISTVVSSEMIVCSNKSPELLPPSTSSRTCIISFDNSAVTPLKPSVISSKPPRPPCSAKKRTSEKLKSLEAKAINKEGENKIIRSGSKAIHTLVERKRRLELANKFIELSTTIPNLKKKDKASIVMGAINHVEQLQKRVKELEKQNKRGKEPTSERLPYVKAKMLEKNILIYINCEKQNGIELKILEMLENLHLFVISTSVLPFGSSTLGITIIAKMDDAYKTRMVDLMDNVRQLLLNGSAKHPT 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04812 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 210 IPR036638 GO:0046983
Trre12g04812 302 PANTHER BHLH TRANSCRIPTION FACTOR 70 293 - -
Trre12g04812 302 Coils Coil 182 209 - -
Trre12g04812 302 Coils Coil 116 136 - -
Trre12g04812 302 SMART finulus 149 198 IPR011598 GO:0046983
Trre12g04812 302 Pfam Helix-loop-helix DNA-binding domain 145 193 IPR011598 GO:0046983
Trre12g04812 302 Gene3D - 140 214 IPR036638 GO:0046983
Trre12g04812 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04812 Trre-Chr12 61647069 61649817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04812 60 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 30.258 1.69e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g04812 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04812 - - tpra:123896700 406.371