Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04811 ATGGACCACTCTTGGGAAAATTGGCCTCTTCATTCGGAATTGGGTGATGATGAAGAATTTTTGAGAGACATAATCTTGCAGCAACCTGTTACATATTCTGGAAGCAGTTTATCATCCTCTAATGAAATGGACGGTTCAGATTGCGCAGGGACAAAGGTTCTTAACCCTTCAACAACGTTTTCAAGTAGTAGTACTCCTAGAACATTTATCTTGTCTTTTGATAAATCAAAAATAATACCAGCTACTACTACTACTACTACTACGGTACAAGAAGAAGAAGCAAGAATTAAAAGTAGAAGCTGTGGAAAATCTAATAATAATAATAATAATAATAAGAGGAGTTTGGAATTAGCAAAAGTGAAAGTGAGTAGTAGTACAAAAAGTAGTGGAAAAAAGAGTAGAAGCGATTCTCAGTGTTTGGATCACATTATGGCTGAGAGAAAAAGGAGATTGGATATAGCACAGAAGTTCATTGCACTTTCTGCTACTATTCCCGGTTTGAAGAAGACGGACAAGACCTCTATACTTTGCGAAGCAATTAATTATGTGAAGCTACTTCAAGAACGTTTGAAGGAGCTAGAGGATCCAAACAAGAAGAGCAAAGAATCAACAATAATCCTCAAAAGAACTGATTTGTGTGCAAATGAACATACCACTGCCTCAAACTCAAATGACACAAATTCTGATCAGGATTGTCACAAATCACTCCATGATGTTAAAGTAAGAGTTTTGGGAAATGAGGTACTCATTGAGATTCATTGTGAGAAGGAAAATGGCATTGAGCTCAAAATATTGAACTTGCTTGAAAATCTTCATTTGATTGTCACCGCCAGCAGTGTATTTCCTTTTGGGAATTCAAATCTTGGCTTTACTATTGTTGCTCAGATGAGTGATGGGTACAAATTGACAGTGGATGATCTGGTGAAAGCCCTACGACAAGTGACTTTGATTAATATGAGGAGTTCTGGCCCAGCAAAACCGATCCGTACTAGTGTATCACGCAAATAA 1008 0.372 MDHSWENWPLHSELGDDEEFLRDIILQQPVTYSGSSLSSSNEMDGSDCAGTKVLNPSTTFSSSSTPRTFILSFDKSKIIPATTTTTTTVQEEEARIKSRSCGKSNNNNNNNKRSLELAKVKVSSSTKSSGKKSRSDSQCLDHIMAERKRRLDIAQKFIALSATIPGLKKTDKTSILCEAINYVKLLQERLKELEDPNKKSKESTIILKRTDLCANEHTTASNSNDTNSDQDCHKSLHDVKVRVLGNEVLIEIHCEKENGIELKILNLLENLHLIVTASSVFPFGNSNLGFTIVAQMSDGYKLTVDDLVKALRQVTLINMRSSGPAKPIRTSVSRK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04811 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Trre12g04811 335 SMART finulus 143 192 IPR011598 GO:0046983
Trre12g04811 335 Gene3D - 127 203 IPR036638 GO:0046983
Trre12g04811 335 MobiDBLite consensus disorder prediction 100 133 - -
Trre12g04811 335 PANTHER BHLH TRANSCRIPTION FACTOR 5 315 - -
Trre12g04811 335 MobiDBLite consensus disorder prediction 84 138 - -
Trre12g04811 335 Pfam Helix-loop-helix DNA-binding domain 140 187 IPR011598 GO:0046983
Trre12g04811 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 201 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04811 Trre-Chr12 61633444 61638217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04811 126 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.632 2.78e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g04811 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04811 - - tpra:123896700 409.838