Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04810 ATGGAGGATTGGTGGGAGAATTGGTTCTCTGATTTGGATATGGACATTGATAAGTCATTCAATCAATGCCAGAGGAATTCTCCCAGGTTAGGCCATTGTTCTTCTGATTCAGGGACTGATGCTTCTGTACAAGGAACAAAGAGGGTGAGAAGCTCATGGAAGATACAAGATCACATAATGTCAGAGAGAAAAAGGAGACATGAAATGGCAGAGAAATTCATACAACTTTCCTCTATTATACCTGGATTGAAGAAGATAGACAAGGTCTCTGTCCTTGGTGAAGCTATTAATCACGTGAAAAATCTTAAACAACGCATAGCAATGCTGGAGCAACAGAGTTATGAGAGGAGAAAGCTCCTTGAAGTGGAGGCCATAGGCATTGAGTCAGAGAAAGAGCTGCTACTTATTAGAATCCATTGTGAGAAACTTAAAGGCATTTTGCTCAAACTATTGGCCTTACTTGAAAGTATGGACCTATCTGTTTCCACTAGTAGCATGCTTCCATTTGGAAAAAATGCCCTCCACATTACCATCATTGCTAAGATGGGTAAGGAATACAAGATAAAAGAGGAAGCATTGGTGAAAAAGTTGAGACATGATATTTTCAAGTTATTTGACATGCAACATGTGATCCATGCTAGTGTATCACTATCAAGCAAGTAA 663 0.3937 MEDWWENWFSDLDMDIDKSFNQCQRNSPRLGHCSSDSGTDASVQGTKRVRSSWKIQDHIMSERKRRHEMAEKFIQLSSIIPGLKKIDKVSVLGEAINHVKNLKQRIAMLEQQSYERRKLLEVEAIGIESEKELLLIRIHCEKLKGILLKLLALLESMDLSVSTSSMLPFGKNALHITIIAKMGKEYKIKEEALVKKLRHDIFKLFDMQHVIHASVSLSSK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04810 220 Gene3D - 43 118 IPR036638 GO:0046983
Trre12g04810 220 SMART finulus 59 108 IPR011598 GO:0046983
Trre12g04810 220 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Trre12g04810 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 115 IPR036638 GO:0046983
Trre12g04810 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Trre12g04810 220 Coils Coil 92 112 - -
Trre12g04810 220 PANTHER BHLH TRANSCRIPTION FACTOR 33 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04810 Trre-Chr12 61624369 61625697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04810 1 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.728 3.60e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g04810 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04810 - - cam:101501845 243.047