Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04809 ATGTGGAGTTCAAGCAAAGTCTCCGAAGAAGAACAAACTGAATCTTCTTCCTTCTCAACAACTCTCTTCAATTTCTCTTCTGGAAACCCTAGAATCGAAGAAACTCGCGGCCTCATGCACGTCTTCCCCGATGAATCTCCTCCTTCTCTTCCTATTGAACGGAAGCCATTGGCATGTGTTGTTGGAGTACCAAATCACATGACTTATGCGGATTTTTGCCAGTTTTGTGGTTCGTTTATTCAACATATGCTTGAAATGCGTATTGTTAGAATGGATAATATGGAAGATCGTTACAGTGTTTTGATTCGATTCGATGAGCAAAATTCTACTGATGCGTTCTACACTCATTACAATGGTCGACGTTTCTCTTCTCTCGAGGTTGAAGTGTGCCGTGTTGTTTTCACGATAGATGTGCAGTATACTGGCTCAATTGAACATGCACAACCATCCAATGCTACTTCAACTGAACAGCCTACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACGAGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAACAGCAGGCTGAAAAATCTATATGTTTCGTTTGTCAAACCACAGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGGCATGCCATAATACACTGGAAAGAAACGCAGCACTGCTATTCCTTAGAAGTGGAAACCAAGCGTGTTTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTAGTTGAGCTGAACTCTCACTGTATGCATGCAGACAGTGGATGTGGCAGCTGCGGAGATAATGCCATGAGAGAAGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAGCGAGTACAATGAACTGCTTGCTACTCAACTTGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACTGAAGGAAAAATTTCTGTAGCCGTTCAGAAGGCTGTCAGTCTCAAACAACAGAAGATTCAGTCCAAGATCGATAGATGTAACAAAGAGAAGAGATTTCTGGATGAGCTTAATGATAATCTTTTGAAAAACGAGGAGATTTGGAAAGCCAAGATACTCGAGATTGAAGAGAGGGAGAAAAAAGCTTTAAAACTGACTGATGATAAGATAACGGGCCTAGAAAAGAAGCTTAGTAACCTCATGATTTGTCTTGAGGGTGGGAACAAGGTAGAACAGCTGCCATTGTCAAATGATACAAATGGTGGAACTGTCTCTGACATTTCAAAAGGATCCTCATCAACTTGA 1374 0.4039 MWSSSKVSEEEQTESSSFSTTLFNFSSGNPRIEETRGLMHVFPDESPPSLPIERKPLACVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDNMEDRYSVLIRFDEQNSTDAFYTHYNGRRFSSLEVEVCRVVFTIDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCMHADSGCGSCGDNAMREAILNSKVEAIVSEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKAVSLKQQKIQSKIDRCNKEKRFLDELNDNLLKNEEIWKAKILEIEEREKKALKLTDDKITGLEKKLSNLMICLEGGNKVEQLPLSNDTNGGTVSDISKGSSST 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04809 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Trre12g04809 457 SMART ring_2 160 199 IPR001841 -
Trre12g04809 457 CDD RING-H2_BRAP2 158 201 IPR047243 -
Trre12g04809 457 ProSiteProfiles Zinc finger RING-type profile. 160 200 IPR001841 -
Trre12g04809 457 PANTHER BRCA1-ASSOCIATED PROTEIN 7 453 - -
Trre12g04809 457 Coils Coil 367 387 - -
Trre12g04809 457 MobiDBLite consensus disorder prediction 1 22 - -
Trre12g04809 457 MobiDBLite consensus disorder prediction 437 457 - -
Trre12g04809 457 ProSiteProfiles Zinc finger UBP-type profile. 194 287 IPR001607 GO:0008270
Trre12g04809 457 SUPERFAMILY RING/U-box 176 275 - -
Trre12g04809 457 Pfam Ring finger domain 159 200 IPR001841 -
Trre12g04809 457 Pfam BRCA1-associated protein 2 51 147 IPR011422 -
Trre12g04809 457 Coils Coil 323 343 - -
Trre12g04809 457 CDD RRM_BRAP2_like 59 139 - -
Trre12g04809 457 Pfam Zn-finger in ubiquitin-hydrolases and other protein 211 270 IPR001607 GO:0008270
Trre12g04809 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 202 IPR013083 -
Trre12g04809 457 SMART Zf_UBP_1 210 259 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04809 Trre-Chr12 61619199 61622399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04809 156 200 C3H Transcription Factor Family AT1G72220 48.936 1.80e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04809 K10632 - gmx:100794688 766.918