Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04798 ATGGCGAAGCTGGTTCTGAAAGCTGGTAGCAGACCTCCATGGGTGGGACTAGCTGCTGCAGTTTGGATCCAAATAGCTGCTGGAAATGCCTACAACTTCCCTCTATACTCCTCTGCTCTCAAATCTGTGTTGGGTCTCAATCAACAACAAGTGACTATTCTTGGAGTGGCCAATGATGTTGGAGAGAATTTTGGTCTGCTACCTGGTATTGCCTGCAACAAATTCCCTCCTTGGGCTTTGCTTCTTGTTGGTTCTGTCCTTTGTTTCTTTGGTTATGGTGTTATCTGGCTTGCTGTTAGCCAAACTGTTTCCAATTTGCCCTATGTCTTGCTATGGCTCGCACTTTGTGTTGCCACGAACAGCAGTGCATGGTTTGGCACGGCTGTGCTTGTTACCAACATGAGAAACTTTCCACTCAGTAGAGGCACAATTTCTGGCATTCTCAAAGGTTATGTAGGGATAAGTGCTTCAGTATATACATTAATATATAGCATATTGCTGAAAGGTTCCGCTTCAAAATTACTTTTGTTTCTAGCAATTGGAGTTTCTATTGTGTGCCTAATTTTGATGTACTTCATTAGGCCTTGTACTCCTCCTTCTGGTGAAGACTCTTCAGTGCATATCCATTTTATTTTCACACAAGCTTCGAGTATTTTACTTGCCACATATCTTGTTATGGCAATGATACTAAGTGACATGGTTTCGATTAATGATGTTGTTTCCTACATCTTAGTTGCAATAATGATTATACTTATGATAACTCCCCTTGCAATTCCTTTGAAAATGACTCTATTTCCTGCAAGTCAAAAAAACAATGTTCCAATAGTTGGTTCTTCTGATCAGTTAGCATCAGGTGGTGATGTTTCAACTTCAGCACAAACAAGTCCATTGCTTGGAAGTTTTCATGAAACTGAGGATGCTTCTTCAGATATTGAGATCCTAATTGCAGAAGGGGAGGGTGCAATTAGGAAGAAAAAGAGACCAAAAAGGGGAGATGATTTTAAGTTCAAAGAAGTTTTAGTTAAGGCTGATTTTTGGCTACTTTGGTTTGCTTATTCATTAGGAGTTGGCTCAGGTGTAACTGTTCTCAATAATTTGGCTCAAATTGGAGTTGCTTCGGGTGTTGAAGATGCAACCATATTGCTTTCGGTCTTCAGCTTTTGCAATTTTATCGGTCGACTAGGTGCTGGTGCTGTCTCTGAACACTTTGTCAGGTTGAAAACACTACCTAGAACAATTTGGATGACAAGTACACAAGTTATTATGATCATAGCATTTTTGCTTTATGCTTCAGCTCTAGATGGCACTCTTTATGCTGCAACAGCTTTGCTTGGAATGTGTTATGGAGTTCAGTATTCTATAATGATCCCAACTGTCTCCGAGCTATTTGGTTTGAAGCACTTTGGCGTAATCAGTAGCTTCATGATGCTCGGAAATCCAATTGGTGCACTTCTTTTTTCTGTTTTTCTAGCTGGTAATTTGTATGATACAGAAGCTGCAAAACAAGGAAACTCCACATGCTATGGTGCAAATTGTTTCAGGATCACTTTTCTGGTTTTGGCTAGTGTTTGTGGAATTGGTGCCATTTTGAGTATAATTTTGACAGTTAGATTAAGACCAGTATATCAAATGTTGTACGCTAGCGGGTCATTTCGACTGTCTCATACTTCAAATCAATGA 1680 0.3988 MAKLVLKAGSRPPWVGLAAAVWIQIAAGNAYNFPLYSSALKSVLGLNQQQVTILGVANDVGENFGLLPGIACNKFPPWALLLVGSVLCFFGYGVIWLAVSQTVSNLPYVLLWLALCVATNSSAWFGTAVLVTNMRNFPLSRGTISGILKGYVGISASVYTLIYSILLKGSASKLLLFLAIGVSIVCLILMYFIRPCTPPSGEDSSVHIHFIFTQASSILLATYLVMAMILSDMVSINDVVSYILVAIMIILMITPLAIPLKMTLFPASQKNNVPIVGSSDQLASGGDVSTSAQTSPLLGSFHETEDASSDIEILIAEGEGAIRKKKRPKRGDDFKFKEVLVKADFWLLWFAYSLGVGSGVTVLNNLAQIGVASGVEDATILLSVFSFCNFIGRLGAGAVSEHFVRLKTLPRTIWMTSTQVIMIIAFLLYASALDGTLYAATALLGMCYGVQYSIMIPTVSELFGLKHFGVISSFMMLGNPIGALLFSVFLAGNLYDTEAAKQGNSTCYGANCFRITFLVLASVCGIGAILSIILTVRLRPVYQMLYASGSFRLSHTSNQ 559
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04798 559 CDD MFS_Mch1p_like 12 528 - -
Trre12g04798 559 Gene3D MFS general substrate transporter like domains 342 542 IPR036259 -
Trre12g04798 559 SUPERFAMILY MFS general substrate transporter 10 198 IPR036259 -
Trre12g04798 559 Pfam Nodulin-like 13 260 IPR010658 -
Trre12g04798 559 SUPERFAMILY MFS general substrate transporter 238 540 IPR036259 -
Trre12g04798 559 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 543 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre12g04798 Trre-Chr12 61564664 61567202 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04798 1 558 Nodulin-like Gene Family AT1G80530 59.503 0.0 699
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04798 - - psat:127087605 956.436