Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04797 ATGAAAGCCAAAAAAGAATGTTTGCTTTCCAATGAAGCTTTTAACCAAAATGCAAAGCAACTCAAAGGGAACAAATTTAGATCCGCATATCAAAACGAAGGAGACGCAATTATGGGTAAGGTTCACGGTTCACTTGCTCGTGCCGGAAAAGTGAGAGGCCAAACACCTAAAGTCGCCAAACAGGACAAGAAGAAGAAGCCACGTGGTCGTGCTCACAAGCGTATGCAGTACAATCGCAGATTCGTCACTGCCGTTGTGGGATTCGGCAAGAAGAGAGGACCAAACTCATCTGAGAAGTAA 300 0.4467 MKAKKECLLSNEAFNQNAKQLKGNKFRSAYQNEGDAIMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04797 99 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 31 99 - -
Trre12g04797 99 MobiDBLite consensus disorder prediction 49 76 - -
Trre12g04797 99 Pfam Ribosomal protein S30 40 96 IPR006846 GO:0003735|GO:0005840|GO:0006412
Trre12g04797 99 MobiDBLite consensus disorder prediction 59 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04797 Trre-Chr12 61556173 61557270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04797 38 99 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 96.774 8.00e-31 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04797 K02983 - zju:107424007 119.783