Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04782 ATGGCAGTTATATCTCTTTCTCTTCTTCCATCACCACCACCACCTTCAACTCATTCTTGTTTCTGTTCCGGAATCAATCTCCGTTCACACAACAATTCTCTTTCAATTCATTCTCCTTCTCTTTTTCCTTCTACTTTCTCTAACTCTAATTCTAAATTCTCTTCTAGAAGAAAACGCTTTCACACTGTTTTCGCTGCTTCTTCTGATTACTATGCTACTCTCGGAGTTCCCAAATCCGCCACCGTTAAAGAAATCAAAGCCGCTTATCGAAGGTTAGCTCGTCAGTATCATCCTGATGTGAATAAGGAACCTGGAGCAACTGATAAGTTTAAAGAGATTAGTAATGCTTATGAGGTGCTATCAGATGACAAAAAGAGGGCTTTGTATGATCAGTACGGTGAGGCAGGAGTTAAGAGTTCAGTGGGAGGAGGATCAAGTGCCTATGCGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGCCAAGTATGGGCGGCTTTGCTGGCATGGATCCAACTGGATTTGGCACACGGCGTCGTAGTACTGTAACGAAGGGTGAAGACATCCGGTATGACTTCTCCTTGGAGTTTTCTGATGCAATTTTCGGAACAGAGAAAGAATTCGAGCTTTTCCATTTAGAGACATGTGAAGTCTGTACTGGTACTGGTGCAAAGTTAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGCAGGGGTCAAGTGATGAGGACCGAACAAACACCTTTTGGTTTGTTCTCACAGGTTTCAGTATGTCCAAGTTGTGGGGGTGACGGTGAAGTCATATCTGAAAATTGTCGTAAATGCAGCGGTGAAGGACGCATACGCGTTAAGAAGACTATGAAAGTTAAAGTTCCTCCCGGGGTTAGTTCAGGCAGTATTTTAAGAGTCACTGGAGAAGGTGATGCTGGACCAAGAGGGGGTCCTCCAGGAGATCTTTATGTATATCTTGACGTGCTTGAGATACCAGGAATTCAAAGAGACGACATAAATCTCCGCTCAACAATTTCAATCAGTTATCTAGAGGCTATACTGGGGTCTGTAGTGCAGGTAAAGACGGTTGAAGGCACTTCTGAACTACAAATCCCTGCTGGTACTCAACCTGGAGATGTCCTCGTCCTTGCAAGGAAGGGTGTACCAAAACTAAACAGACCATCAATACGTGGTGACCACTTATTTACTGTTAAAGTTACAATACCAAAACGTATCAGTCCAAAGGAGCGTGAGGTGCTTGAAGAACTTGCTTCTCTAGGTGACCCAAGCAGTCATTCAAGATCCCGTCCTAGGACCCAATCTTCCGCAGGAAGTAAGGAAAGTCCTGCAGCTCAAATGGCCGAAAGTCCAACAGCAACAGTTACAGAAACACCAGAGAAATCAGAAGACCAAGATGACTTATGGAGTAAACTAAAGAACGTGGCTGGGTCTGTGGCAAATGGAGCTCTAAAGTGGTTTAAAGATAATCTTTAG 1488 0.4362 MAVISLSLLPSPPPPSTHSCFCSGINLRSHNNSLSIHSPSLFPSTFSNSNSKFSSRRKRFHTVFAASSDYYATLGVPKSATVKEIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQYGEAGVKSSVGGGSSAYATNPFDLFETFFGPSMGGFAGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSDAIFGTEKEFELFHLETCEVCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPSCGGDGEVISENCRKCSGEGRIRVKKTMKVKVPPGVSSGSILRVTGEGDAGPRGGPPGDLYVYLDVLEIPGIQRDDINLRSTISISYLEAILGSVVQVKTVEGTSELQIPAGTQPGDVLVLARKGVPKLNRPSIRGDHLFTVKVTIPKRISPKEREVLEELASLGDPSSHSRSRPRTQSSAGSKESPAAQMAESPTATVTETPEKSEDQDDLWSKLKNVAGSVANGALKWFKDNL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04782 495 Gene3D - 332 424 - -
Trre12g04782 495 SMART dnaj_3 68 125 IPR001623 -
Trre12g04782 495 FunFam Putative Mitochondrial DnaJ chaperone 273 322 - -
Trre12g04782 495 Gene3D - 186 322 - -
Trre12g04782 495 Gene3D - 216 280 - -
Trre12g04782 495 CDD DnaJ_zf 216 280 IPR001305 GO:0031072|GO:0051082
Trre12g04782 495 Gene3D DnaJ domain 65 171 IPR036869 -
Trre12g04782 495 ProSiteProfiles Zinc finger CR-type profile. 203 285 IPR001305 GO:0031072|GO:0051082
Trre12g04782 495 Hamap Chaperone protein DnaJ [dnaJ]. 66 479 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre12g04782 495 NCBIfam molecular chaperone DnaJ 69 423 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre12g04782 495 FunFam Chaperone protein dnaJ A6 chloroplastic 66 172 - -
Trre12g04782 495 MobiDBLite consensus disorder prediction 421 472 - -
Trre12g04782 495 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Trre12g04782 495 CDD DnaJ_C 187 410 - -
Trre12g04782 495 Pfam DnaJ domain 69 130 IPR001623 -
Trre12g04782 495 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 38 433 - -
Trre12g04782 495 MobiDBLite consensus disorder prediction 426 462 - -
Trre12g04782 495 SUPERFAMILY HSP40/DnaJ peptide-binding domain 184 334 IPR008971 GO:0006457|GO:0051082
Trre12g04782 495 Pfam DnaJ C terminal domain 189 407 IPR002939 -
Trre12g04782 495 CDD DnaJ 69 122 IPR001623 -
Trre12g04782 495 ProSiteProfiles dnaJ domain profile. 69 133 IPR001623 -
Trre12g04782 495 SUPERFAMILY Chaperone J-domain 65 175 IPR036869 -
Trre12g04782 495 FunFam Molecular chaperone Hsp40/DnaJ family protein 332 424 - -
Trre12g04782 495 SUPERFAMILY HSP40/DnaJ peptide-binding domain 333 418 IPR008971 GO:0006457|GO:0051082
Trre12g04782 495 Coils Coil 488 495 - -
Trre12g04782 495 FunFam Chaperone protein dnaJ A6 chloroplastic 216 280 - -
Trre12g04782 495 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 203 283 IPR036410 -
Trre12g04782 495 Pfam DnaJ central domain 216 280 IPR001305 GO:0031072|GO:0051082
Trre12g04782 495 PRINTS DnaJ domain signature 105 125 IPR001623 -
Trre12g04782 495 PRINTS DnaJ domain signature 71 89 IPR001623 -
Trre12g04782 495 PRINTS DnaJ domain signature 89 104 IPR001623 -
Trre12g04782 495 PRINTS DnaJ domain signature 125 144 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04782 Trre-Chr12 61462951 61470053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04782 70 176 C2H2 Transcription Factor Family AT1G74250 37.719 9.00e-11 62.4