Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04778 ATGAGTAGTGGAGGTGGAGCAGTTTTCTCTTTTGTCAAAGTCAGTATTCCTAATTTACATAATAAGGCAAGATTCATATTATTTCGGTGTCTATCTGAATATCAAACCCCAGGTTTTGTTTGCGCCGTTGTCGACAACATGACGCGTTTTGTCATCGTTCACAACGACAGCAGAGATACCACTCAATCTCATAGTTATGGTCCTAATGCCTTTAAGCTACACAGGTTGCCGGTTCCCAGGCAGGGGCAAGTGCTTGGTTTGGTTGGGGCAAATGGAATTGGAAAGTCCACTGCACTTAAGATTTTGGCTGCAAAACTGAAGCCTAACTTGGGTCGTTTCACAGACCCCCCTGATTGGGAGGAAATTTCGATCTTTTTTCAAGGATCTGAATTGCATAATTACTTTACTGGCATTCTAGAGGATGGTTTCAAGGCTATTATCAAGCCTCAGTATGTTGACCAAATTCCACGCGCTATGCAAGGGAATGTGGGGCAGCTGCTAGACCAAAGAAATGAGAGAGACATGATGGAAAGGCTTTGTGCTGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGTGATCTTTCAGGGGGTGAGCTCCAAAGGTTTGCCATTGCAGTTATTGCCATCCAAAATGCTGAAATATACATGTTTGATGAACCTTCCAGTTATCTTGATGTGAAACAGAGGCTGAAAGCTGCTCAAGTTGTTCGGTCATTGCTCAGGCCTAATAACTATGTAGTTGTTGTCGAGCACGATCTTAGTGTTTTGGACTACTTATCAGACTTTATTTGCTGTTTGTATGGCAAACCTGGTGTATACGGTGTTGCAACACTCCCTTTCTCAGTCATAGAAGGAATTAATATCTTCTTGTCCGGCTTTAATCCATCAGAAAGTGTTAGGTTTCGGGAGGTCTCTTTTACTTTCAAGGTTGCAGAGACTCCGCAGGAAACTGCTGAGGAAGCTCAAACTTATGCTCGATTCAAATACCCAACCATGACTAAAACTCAAGGCAATTTCAGGCTTCATGCAGTTGAAGGAGAATTTACAGATTCACAGATTATTGTGTTGCTGGGCGAGAATGGGACAGGAAAGACAACATTCATTCGTATGCTGGCTGGTTTGTTGAAACCCGATACTATAGGTGAATCTGATGTGGAGATGCCCGAGTTCAACATATCATACAAACCTCAGAAAATTAAACGAACAATCCAATTATCTGTTAGACACTTGCTACATCTAAAAATCCGTGATGCATATACGGATCCCCAGTTTATATCAGATGTGATGGAGCCACTACTTATTGAACAGTTGATGGACCAAGAGGTTCAGAATCTTTCTGGTGGAGAGTTGCAAAGAGTAGCCTTATGCCTTTGTCTTGGAAAGCCTGCAGACATCTATCTAATAGATGAGCCAAGTGCGTATCTTGATTCGGAACAGCGTATTATTGCTGCAAAAGTCATCAAGAGGTTTATTCTTCATGCAAAGAAAACAGCCTTTATCGCGGAGCATGATTTCATCATGGCAAATTATCTTGCTGACAGAGTTATCCTTTACGAGGGTCAACCTTCAATTGATTGTACTGCAAATTGTCCACAATCATTCCTTACTGGGATGAACCTTTTCTTATCTCATCTTGATATCACATTTAGAAGAGACCCAACTAATTTCTGCCCAAGGATCAACAAGCTTGGATCAACAGAGGACATAGAGCAAAAGAATGCTGGGACTTATTATTACCTTGATGACTGA 1755 0.4148 MSSGGGAVFSFVKVSIPNLHNKARFILFRCLSEYQTPGFVCAVVDNMTRFVIVHNDSRDTTQSHSYGPNAFKLHRLPVPRQGQVLGLVGANGIGKSTALKILAAKLKPNLGRFTDPPDWEEISIFFQGSELHNYFTGILEDGFKAIIKPQYVDQIPRAMQGNVGQLLDQRNERDMMERLCADLELNQVIDRNVGDLSGGELQRFAIAVIAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNNYVVVVEHDLSVLDYLSDFICCLYGKPGVYGVATLPFSVIEGINIFLSGFNPSESVRFREVSFTFKVAETPQETAEEAQTYARFKYPTMTKTQGNFRLHAVEGEFTDSQIIVLLGENGTGKTTFIRMLAGLLKPDTIGESDVEMPEFNISYKPQKIKRTIQLSVRHLLHLKIRDAYTDPQFISDVMEPLLIEQLMDQEVQNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIIAAKVIKRFILHAKKTAFIAEHDFIMANYLADRVILYEGQPSIDCTANCPQSFLTGMNLFLSHLDITFRRDPTNFCPRINKLGSTEDIEQKNAGTYYYLDD 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04778 584 FunFam ABC transporter E family member 2 79 311 - -
Trre12g04778 584 Pfam ABC transporter 81 223 IPR003439 GO:0005524
Trre12g04778 584 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 53 294 IPR003439 GO:0005524
Trre12g04778 584 Coils Coil 166 186 - -
Trre12g04778 584 PRINTS ABC transporter family E signature 119 135 IPR013283 -
Trre12g04778 584 PRINTS ABC transporter family E signature 58 78 IPR013283 -
Trre12g04778 584 PRINTS ABC transporter family E signature 135 161 IPR013283 -
Trre12g04778 584 PRINTS ABC transporter family E signature 86 111 IPR013283 -
Trre12g04778 584 Gene3D - 38 311 IPR027417 -
Trre12g04778 584 ProSitePatterns ABC transporters family signature. 447 461 IPR017871 GO:0005524|GO:0016887
Trre12g04778 584 SMART AAA_5 352 525 IPR003593 GO:0016887
Trre12g04778 584 SMART AAA_5 81 273 IPR003593 GO:0016887
Trre12g04778 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 520 IPR027417 -
Trre12g04778 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 268 IPR027417 -
Trre12g04778 584 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 56 584 IPR013283 -
Trre12g04778 584 FunFam ATP-binding cassette sub-family E member 1 315 582 - -
Trre12g04778 584 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 301 547 IPR003439 GO:0005524
Trre12g04778 584 Gene3D - 314 582 IPR027417 -
Trre12g04778 584 Pfam ABC transporter 344 475 IPR003439 GO:0005524
Trre12g04778 584 ProSitePatterns ABC transporters family signature. 196 210 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04778 Trre-Chr12 61435280 61440606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04778 76 268 Calmodulin-binding Proteins AT2G36910 26.396 6.40e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04778 K06174 - gmx:100797423 890.567