Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04776 ATGGCTTTTTGCCCACTTTTTTGTTGTGGAATTGCTTCGGATCGCAAAGGACGTGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACACTCAGCTACAAATAATTTCAACTATGATAACAAGCTTGGGGAAGGAGGATTCGGAAGTGTGTACTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGGTTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGCCAGGAACGTCTAATTGTATATGATTATATGCCGAATTTGAGCCTGCTCTCTCATCTTCACGGACAGCACTCAACAGAAAGCCTCCTTGATTGGAATCGACGCATGAATATTGCAATCGGGTCTGCTGAGGGAATTTTATATCTTCACGTCCAAGCAACACCGCATATCATCCATAGGGACGTTAAAGCAAGCAATGTATTACTGGATTCAGATTTCCAAGCACGTGTTGCTGATTTTGGTTTTGCCAAGTTGATCCCTGACGGGGCAACGCATGTGACTACAAGAGTTAAAGGCACCCTTGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCAAACGAGAGTTGTGATGTCTACAGTTTTGGAATTCTCCTTCTAGAACTTGCTAGCGGCAAAAAACCACTCGAAAAACTAAGCTCATCAGTGAAACGGTCAATTAATGATTGGGCTCTACCGTTAGCTTGTGAGAAAAAATTTAGCGAACTTGCTGATCCAAGACTTAATGGTGACTATTCTGAAGAAGAGCTTAAAAGGGTTGTATTAGTTGCTCTAATATGTGCTCAGAGTCAGCCGGAAAAGAGACCGACGATGCTCGAGGTAGTAGAACTACTGAAGGGAGAATCAAAAGAGAAGGTTTCTCAGTTGGAGAATAATGAACTCTTTAAGAACCCTCTTGCTGTTGGAAATAACAATGATGAGATATCAGCTGCTGAAGGAAGTTCAGACTTCATCTCAGAAGAGAAGGAATCTAAACATGAGAATACAGAACCTTGA 1095 0.4228 MAFCPLFCCGIASDRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSTESLLDWNRRMNIAIGSAEGILYLHVQATPHIIHRDVKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSSVKRSINDWALPLACEKKFSELADPRLNGDYSEEELKRVVLVALICAQSQPEKRPTMLEVVELLKGESKEKVSQLENNELFKNPLAVGNNNDEISAAEGSSDFISEEKESKHENTEP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04776 364 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Trre12g04776 364 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Trre12g04776 364 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Trre12g04776 364 MobiDBLite consensus disorder prediction 349 364 - -
Trre12g04776 364 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Trre12g04776 364 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04776 364 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04776 364 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Trre12g04776 364 PANTHER OS01G0253100 PROTEIN 21 318 - -
Trre12g04776 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Trre12g04776 364 MobiDBLite consensus disorder prediction 332 364 - -
Trre12g04776 364 CDD STKc_IRAK 46 313 - -
Trre12g04776 364 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Trre12g04776 364 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04776 364 Coils Coil 305 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04776 Trre-Chr12 61417519 61420603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04776 28 314 Trihelix Transcription Factor Family AT1G70460 50.515 1.87e-92 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Trre12g04776 Pkinase 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04776 - - gmx:100788153 674.855