Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04758 ATGTCTACATATAGTGAAGCAACGGTGCATCTTGACAGTGATACAGAAGAAGTAGAAATTAATAGTGGTAATGGTGCTGACACCAATGGAGATGCAGAAGATATAGAATTTAATAGCGGCAATGGTGTTCGTACTGATAGAGATACACAATGTAATGGCGCGTGCAGCCAACAACAGAAAGAGAACTCCGATGATTACAAATGTATAAGTGATTTGACAGATGATGATATAAGGGGTATGGAATTCAGCACAGAGGGAGAAGCTATAGCATTTTATACTATGTATGCACATTTCCATGGGTTTGTTGTAAGAAAAGATGATGTGCTACGTGATCGTGACAAAAAAAACATTGTTATGCGTCAATTAGTTTGCAATAAAGAGGGTACTAGTGACGGCCAGGAGAGGCCAACTATGCGAACAGGGTGTCGTGCGAAACTTCGAATAGTCTATGATGTTATTCGTAAAAAATTTAGAGTTTCTGTTTTCAACCCTACTCACAACCACGATTTGACTCCTGAAAAATTTGTTCATTTGATTCCTAACTATCGTAGATTGACTGAAGAGGATAAACAAGTTGTTAATGGCTTGCATTCCCAAGGCGTTAGAACTTGTCATATCATGGGTTTTTTGATGGGTCAAAAGGGTGGTCATGAAGGTGTCGGGTTTATCAGAAAGGACCTATATAACTACACGGATCATCAAGCTAGGGTTAGAATAGAAGGAGGAGATACATATGCGACTTTGAGTTATTTTCAGGGTAAGGCTGATGGTGATTCGTCATTTTTTTCAGAGTTTAGTTTTACTGATGATGGACGCCTACAAAATATTTTTTGGGCAGATGCTACCAGTAGGTTTGACTATGAGTGTTTTGGCGACGTGGTTGCTTTTGACACGACTTATAGAAAGAACAGGTATGGCAAACCACTTGTCATTTTTTCCGGATATAACCATCATGGAGAAACAACAATTTTTGCTGCTGCGTTAGTTTGTGATGAAACAATTGAGACCTACAAGTGGGTTTTAAATTTGTTTTCAAAGGCCATGTATGGGAAACATCCAAAAGCAGTGATTACTGATGGTGATAAATCAATGAGAAAAGCCATACAAGTTGTATTTCCAAACACAAGGCACCGCCTTTGCGCATGGCATTTGCATAAAAATGCTGGTGAACATGTAAAGGATAAAAAGTTTTTAGAAGAGTTTAAGTCGCTAATGTATTCTCACTATACACCTGAAAAATTTGAATCTGAGTGGAAGAGGGTTGTTGATAGATATAATGTATCAAACAATGATTGGGTAAACAAAACTTATGAATTGAAGAGAATGTGGGCAAGTTCATACATGCGAGACCATTTTTTATGTGGAGTTAGAACCACATCAATCTGTGAAGGTGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAACAGCATTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGATTATAGACATAATGAATTATTGTCTGATTTTAAATCATTCTATTATCATCCTGTGTTGACAACTGCCTTGCCGGGGTTTGAGTTAGGAGCTTCAAAGATATTCACCGCTAAAAAATTTAAAGTTGTCAAAAAGGCGATAGAGAATGTTGCTGCATTATCAATCACTGAACGTAGTGAAAATGAAGATAGTGTCGTTTTCAAGGTTAATGTATATCGCAACAAAGATGTAGCTTTTTATGTTCATCTTGACAAGTTGCATACTAAATTTTTATGTGATTGTAGACGTTTTGAACGTAGAGGACTACCATGTTCCCACATTATTTGTGCCATGAAGTACGAGGACATGGATATGTTTCCCGAGAGTTTGATTTGCAAGAGATGGACAAAAACTGCGAAGAGTGATCACATCTCATCAGTTGCCTCACAAGAAAGTACCGATGAAAAAATGTCCATGTTCCGTCGAGGAGCACTTGCCGCTGCATTCAATAGTCTATGTGACGTTTCTTGCAAGAGCGCAAGTGATTATAAGGAGGCTTTGGAAGGGATATATAGTTTGTGCAATAAGATAAATAAGGGTCGTGAGGGAAATGGACAAGGCAAGCATAAGGCCAAGAAAAATGCTGCGCGTGATCCACTGACGGTGAAGTTTAAAGGTGCCCCTAGGAGGGTAGCATCGAGGCCGCAAAGAAACTGTACTCACTGTAGAAAGCCTGGCCACTACATAGTGAACTGTCCAACACTTGCCGGAACTGGTGTCAAATTTGAAGATGAAGAGGTAGATGCTTCGCGTGCTGAATCTGATAAAGAATCAAAAAGTTTTAGTATGTCTAAAGGTCATGATATAAATGATGACATACACTCTGTGGCAGAGCCAGATGGTGGACAAGACGTTGAGAAAAGCACTAGAGTTAAACGTAAGAGAGAATGTGACAATGTTGTTTTTTCAACACAAGACTCCATCAATAAAAGAACAACAAATACAGTCACCGGAAATGATGATGCTTCTGTGAATCCAAATATTGCAATCAGCATTGATAATAATCATATGTCACGTGACGTACAAAAAAAGAAAAAAAAGAATCATATGTCACGTGATGTTGGTGAAACTTCAAGACGGACTCGTGATGTCGGGAATGATGTTAATTATTTTACTATGCACAGTGGTATTCCAAGTAATGGTGGATACTATTTTCCACAATTTCCTCCGGGAGGCATCCCCTCGTCACATCCTAACACCGTTCTGCATGCGGGAACACCAAGTGCTCCTAGTTATACACCGCACTATTTTCCACAATTTCCTCCGGGAGGCATCCCCTCGTCACATCCTAACACCGTTCTGCATGCGGGAACACCAAGTGCTCCTAGTTATACACCGCACTATTTTCCACAATTTCCTCCGGGAGGCATCCCCTCGTCACATCCTAACACCGTTCTGCATGCGGGAACACCAAGTGCTCCTAGTTATACACCGTTTATGACTACGTTGGAGGAGGTGGAGCGTTCTGCAAAACTTCGCAAGTTATAG 3000 0.3973 MSTYSEATVHLDSDTEEVEINSGNGADTNGDAEDIEFNSGNGVRTDRDTQCNGACSQQQKENSDDYKCISDLTDDDIRGMEFSTEGEAIAFYTMYAHFHGFVVRKDDVLRDRDKKNIVMRQLVCNKEGTSDGQERPTMRTGCRAKLRIVYDVIRKKFRVSVFNPTHNHDLTPEKFVHLIPNYRRLTEEDKQVVNGLHSQGVRTCHIMGFLMGQKGGHEGVGFIRKDLYNYTDHQARVRIEGGDTYATLSYFQGKADGDSSFFSEFSFTDDGRLQNIFWADATSRFDYECFGDVVAFDTTYRKNRYGKPLVIFSGYNHHGETTIFAAALVCDETIETYKWVLNLFSKAMYGKHPKAVITDGDKSMRKAIQVVFPNTRHRLCAWHLHKNAGEHVKDKKFLEEFKSLMYSHYTPEKFESEWKRVVDRYNVSNNDWVNKTYELKRMWASSYMRDHFLCGVRTTSICEGVNSFIKKYVRHKNSIVDFLHNFERALKDYRHNELLSDFKSFYYHPVLTTALPGFELGASKIFTAKKFKVVKKAIENVAALSITERSENEDSVVFKVNVYRNKDVAFYVHLDKLHTKFLCDCRRFERRGLPCSHIICAMKYEDMDMFPESLICKRWTKTAKSDHISSVASQESTDEKMSMFRRGALAAAFNSLCDVSCKSASDYKEALEGIYSLCNKINKGREGNGQGKHKAKKNAARDPLTVKFKGAPRRVASRPQRNCTHCRKPGHYIVNCPTLAGTGVKFEDEEVDASRAESDKESKSFSMSKGHDINDDIHSVAEPDGGQDVEKSTRVKRKRECDNVVFSTQDSINKRTTNTVTGNDDASVNPNIAISIDNNHMSRDVQKKKKKNHMSRDVGETSRRTRDVGNDVNYFTMHSGIPSNGGYYFPQFPPGGIPSSHPNTVLHAGTPSAPSYTPHYFPQFPPGGIPSSHPNTVLHAGTPSAPSYTPHYFPQFPPGGIPSSHPNTVLHAGTPSAPSYTPFMTTLEEVERSAKLRKL 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04758 999 ProSiteProfiles Zinc finger SWIM-type profile. 570 606 IPR007527 GO:0008270
Trre12g04758 999 SMART 26again6 581 608 IPR006564 GO:0008270
Trre12g04758 999 MobiDBLite consensus disorder prediction 839 864 - -
Trre12g04758 999 Gene3D - 716 803 - -
Trre12g04758 999 MobiDBLite consensus disorder prediction 750 796 - -
Trre12g04758 999 PANTHER OS01G0519700 PROTEIN 76 644 - -
Trre12g04758 999 Pfam MULE transposase domain 293 387 IPR018289 -
Trre12g04758 999 MobiDBLite consensus disorder prediction 1 46 - -
Trre12g04758 999 Pfam FAR1 DNA-binding domain 91 171 IPR004330 -
Trre12g04758 999 SUPERFAMILY Retrovirus zinc finger-like domains 714 741 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04758 Trre-Chr12 61269462 61272914 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre12g04758 MULE 2.7e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04758 - - mtr:120580627 1066.99