Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04752 ATGGTACAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGATCTTGGGTCTCTGAGATTCGTCATCCATTATTGAAAAGGAGGGTGTGGTTAGGAACATTTGAAACAGCTGAAGAAGCAGCTAAAGCATATGATGAAGCAGCAATTTTGATGAGCGGAAGAAATGCAAAAACAAATTTTCCAATTAATGTGGAAAATAAAATGAATTCTATTTCAACTTCTTCCAAAGCATTTTCTGCAGTACTTAATGCAAAGTTAAGGAAGTGTTGCAAGTTTCCTTCACCTTCACTCACTTGTCTAAGGCTTGATGCAGAGAATTCACACATTGGAGTGTGGCAGAAAGGTGCAGGTCCTCGTTCTGAATCAAATTGGATTATGATGGTTGAGTTGGAAAGGAAAAAAAGTGCTTCTGATTCAGAATTTTCAAAAAAGGCAGAGAAAGTAGTTAAGCCAGAGGAATTAAGTAAAAATGGTTTAGATGAAGAACAGAAAATTGCTTTGCAGATGATAGAAGAACTTCTCAATAGAAACTAA 540 0.3722 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPINVENKMNSISTSSKAFSAVLNAKLRKCCKFPSPSLTCLRLDAENSHIGVWQKGAGPRSESNWIMMVELERKKSASDSEFSKKAEKVVKPEELSKNGLDEEQKIALQMIEELLNRN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04752 179 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Trre12g04752 179 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Trre12g04752 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 138 - -
Trre12g04752 179 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Trre12g04752 179 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Trre12g04752 179 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Trre12g04752 179 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Trre12g04752 179 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Trre12g04752 179 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Trre12g04752 179 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04752 Trre-Chr12 61222926 61223860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04752 1 179 AP2-EREBP Transcription Factor Family AT1G15360 61.307 2.93e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre12g04752 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04752 - - gmx:100778381 263.077