Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04704 ATGGAAGCTAGAAATGGAGAAACCAACAATGTGAACATCAAAACAAAGCTATGCAGAAATTTCATGCATGGAACTTGTAATCTTGGAGCTAGATGCAACTATGCACATGGCTACTCTGAACTCAGAGAATCACCAAAACTCTGCAGAATGTTCTCATCCAACGGACATTGCACCTTTGGAGACAACTGTCGTTACCTCCATTCAGCTCCTCATTATCTTGAGTCTGCTGTAATCAACCTCACTCCAACACCACAACAAGGGACAGTGCAGAATGCAGGATGGAGCACCATGCAAACTGCTGCAATTAACGATGGTTCGTCTTCTGGACAAAACAAGAGGCTTAAAACTTCTACTGTTCCTGCTACAAATGACCCAGCCAGCAATAGCACGGTGGCCACAACCAAGTTGCATGTAAGGGGACCCTATGCTGGTAAAAGCAGGTTCGACAAAGAGGCCATGAAAGGAGTCATTGGCAAATATGCTGATTGGGTTTAA 495 0.4444 MEARNGETNNVNIKTKLCRNFMHGTCNLGARCNYAHGYSELRESPKLCRMFSSNGHCTFGDNCRYLHSAPHYLESAVINLTPTPQQGTVQNAGWSTMQTAAINDGSSSGQNKRLKTSTVPATNDPASNSTVATTKLHVRGPYAGKSRFDKEAMKGVIGKYADWV 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04704 164 SMART c3hfinal6 12 38 IPR000571 GO:0046872
Trre12g04704 164 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Trre12g04704 164 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Trre12g04704 164 PANTHER CCCH ZINC FINGER/TIS11-RELATED 13 107 IPR045877 GO:0003729
Trre12g04704 164 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Trre12g04704 164 MobiDBLite consensus disorder prediction 103 128 - -
Trre12g04704 164 ProSiteProfiles Zinc finger C3H1-type profile. 12 39 IPR000571 GO:0046872
Trre12g04704 164 FunFam zinc finger CCCH domain-containing protein 15-like 6 44 - -
Trre12g04704 164 Gene3D - 45 73 - -
Trre12g04704 164 Gene3D - 5 44 - -
Trre12g04704 164 SUPERFAMILY CCCH zinc finger 45 70 IPR036855 GO:0046872
Trre12g04704 164 Pfam CCCH-type zinc finger 46 67 IPR041367 -
Trre12g04704 164 SUPERFAMILY CCCH zinc finger 10 42 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04704 Trre-Chr12 60925043 60926653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04704 16 70 C2H2 Transcription Factor Family AT5G18550 35.135 7.52e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre12g04704 zf-CCCH 2.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04704 - K15687 cam:101493245 145.206