Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04672 ATGACACTCAAAAGCTATGCATCACTTCTCTTCAATTTAATTGGCCTGGAAGATTCACAAACAAACAAGGATGCAACTATACCTTCTTACATTGTTGCTACCTCAACTGTTCAAAAGAAGACCAATCAATCAACAATCAACAATGATGTTGGTTTATGTTGTGTGTGTTTGTCAATGTTAAACAACAAAGATGAAATTCGTGTACTTCCTTGTTTGCATGAATTTCATGAGGTTTGTGTAAATAGTTGGCTAAATGGTCATAAAAAAACATGTCCATTATGTCGTTTTTCCATGGGAGCTGAAGAAAAGTCTCATCATGCTGAAATGTTCAGTGATGAGATGCTAATATGGTTTTCTTCTTTCCATATAAATGGTATGTAA 381 0.3412 MTLKSYASLLFNLIGLEDSQTNKDATIPSYIVATSTVQKKTNQSTINNDVGLCCVCLSMLNNKDEIRVLPCLHEFHEVCVNSWLNGHKKTCPLCRFSMGAEEKSHHAEMFSDEMLIWFSSFHINGM 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04672 126 ProSiteProfiles Zinc finger RING-type profile. 53 95 IPR001841 -
Trre12g04672 126 SMART ring_2 53 94 IPR001841 -
Trre12g04672 126 SUPERFAMILY RING/U-box 38 99 - -
Trre12g04672 126 PANTHER TARGET OF ERK KINASE MPK-1 35 103 - -
Trre12g04672 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 102 IPR013083 -
Trre12g04672 126 Pfam Ring finger domain 53 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04672 Trre-Chr12 60609368 60609748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04672 35 98 C3H Transcription Factor Family AT1G04790 43.750 8.64e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04672 - - gmx:100809233 163.31